RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CACNG2Q9Y698 323 aa10.41□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 DOCK11Q5JSL3 2073 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 BBIP1A8MTZ0 92 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 FFAR1O14842 300 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 PLPP2O43688 288 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 PIP5K1CO60331 668 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 UBOX5O94941 541 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 PNPP00491 289 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 IFNA14P01570 189 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 VIMP08670 466 aaKnown RBP10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 CST2P09228 141 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 ANPEPP15144 967 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 MAKP20794 623 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 MPV17P39210 176 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 ARFIP2P53365 341 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 RPL27P61353 136 aaKnown RBP10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 TEKQ02763 1124 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 ZNF718Q3SXZ3 478 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 ALG10Q5BKT4 473 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 USP51Q70EK9 711 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 CLDN22Q8N7P3 220 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 FAM156AQ8NDB6 213 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 OR1J1Q8NGS3 322 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 KLF14Q8TD94 323 aaPredicted RBP10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 BPIFA2Q96DR5 249 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 PRRC1Q96M27 445 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 OR2H1Q9GZK4 316 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 LPAR2Q9HBW0 351 aa10.4□□□□□ -0.74
MSH5-SAPCD1-205ENST00000476085 C5orf49A4QMS7 147 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 FAM220BPB1ANY3 271 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 H3BSA7 217 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 DYNC1I1O14576 645 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 MRASO14807 208 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 PRSS23O95084 383 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 NGFP01138 241 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 IGHV1-46P01743 117 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SCG5P05408 212 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 CD55P08174 381 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 LAP3P28838 519 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 MDH1P40925 334 aaKnown RBP10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ZNF81P51508 661 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 MVKQ03426 396 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 HSF2Q03933 536 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 PRKCDQ05655 676 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ST3GAL3Q11203 375 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ENDOGQ14249 297 aaKnown RBP10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SGCAQ16586 387 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ANKDD1AQ495B1 522 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SPRNQ5BIV9 151 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 AVPI1Q5T686 147 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SYT9Q86SS6 491 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 AKR7LQ8NHP1 331 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SLC25A40Q8TBP6 338 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 FNDC8Q8TC99 324 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SNX33Q8WV41 574 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 IPCEF1Q8WWN9 437 aaPredicted RBP10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 NSMAFQ92636 917 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 OR2J1Q9GZK6 312 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 KCNN2Q9H2S1 579 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 TIMM10BQ9Y5J6 103 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SNX13Q9Y5W8 968 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 MGAM2Q2M2H8 2515 aa10.39□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 PKD1L1Q8TDX9 2849 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 LOC100653049A0A140TA62 436 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 GMNCA6NCL1 334 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ZSCAN5BA6NJL1 495 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 KRT34O76011 436 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 MPZL1O95297 269 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 FSHBP01225 129 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 NR2C1P13056 603 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 IFI30P13284 250 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ZNF26P17031 533 aaPredicted RBP10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 CFPP27918 469 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 LIPAP38571 399 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 HILS1P60008 231 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 CTXN1P60606 82 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 ERVK-25P63136 954 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 GUCY1A3Q02108 690 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 CD47Q08722 323 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 TSTQ16762 297 aaKnown RBP10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 FAM205BPQ63HN1 556 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 FAHD2BQ6P2I3 314 aaPredicted RBP10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 RFPL4BQ6ZWI9 263 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 C1QL2Q7Z5L3 287 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 TSEN54Q7Z6J9 526 aaKnown RBP10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 MICU2Q8IYU8 434 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 RNF113BQ8IZP6 322 aaKnown RBP10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 OFCC1Q8IZS5 231 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 OR2T12Q8NG77 320 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 RAB39BQ96DA2 213 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 FAHD2AQ96GK7 314 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 RBP7Q96R05 134 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 WACQ9BTA9 647 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 OCEL1Q9H607 264 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 SAP30LQ9HAJ7 183 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 CCNB1IP1Q9NPC3 277 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 DECR2Q9NUI1 292 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 CMTM6Q9NX76 183 aa10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 GMPR2Q9P2T1 348 aaKnown RBP10.38□□□□□ -0.75
MSH5-SAPCD1-205ENST00000476085 EIF3KQ9UBQ5 218 aaKnown RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms