RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 MT-ND5P03915 603 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 MAKP20794 623 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 LAP3P28838 519 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 GDI2P50395 445 aaKnown RBP11.3□□□□□ -0.6
CPSF4-210ENST00000469897 MMP15P51511 669 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 CTXN1P60606 82 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 TEKQ02763 1124 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 ST3GAL3Q11203 375 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 HFEQ30201 348 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 COQ5Q5HYK3 327 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 TMEM255AQ5JRV8 349 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 SHQ1Q6PI26 577 aaKnown RBP11.3□□□□□ -0.6
CPSF4-210ENST00000469897 C1orf229Q6ZS94 237 aaPredicted RBP11.3□□□□□ -0.6
CPSF4-210ENST00000469897 MICU2Q8IYU8 434 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 SLC25A40Q8TBP6 338 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 CCL17Q92583 94 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 MARS2Q96GW9 593 aaKnown RBP11.3□□□□□ -0.6
CPSF4-210ENST00000469897 OR2J1Q9GZK6 312 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 WNT5BQ9H1J7 359 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 GID8Q9NWU2 228 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 GMPR2Q9P2T1 348 aaKnown RBP11.3□□□□□ -0.6
CPSF4-210ENST00000469897 STX18Q9P2W9 335 aaKnown RBP11.3□□□□□ -0.6
CPSF4-210ENST00000469897 HIF3AQ9Y2N7 669 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 WIPI2Q9Y4P8 454 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 TIMM10BQ9Y5J6 103 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 SNX13Q9Y5W8 968 aa11.3□□□□□ -0.6
CPSF4-210ENST00000469897 TRAV20A0A0B4J274 112 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 ELOVL7A1L3X0 281 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 NPIPB13A6NJU9 1138 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 BBIP1A8MTZ0 92 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 NPIPB4C9JG80 1138 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 J3KTA2 159 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 SASH3O75995 380 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 MPZL1O95297 269 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 NGFP01138 241 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 IGHV1-46P01743 117 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 TROVE2P10155 538 aaKnown RBP eCLIP11.29□□□□□ -0.6
CPSF4-210ENST00000469897 RPL27P61353 136 aaKnown RBP11.29□□□□□ -0.6
CPSF4-210ENST00000469897 CGB2Q6NT52 195 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 C12orf54Q6X4T0 127 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 ZNF771Q7L3S4 317 aaPredicted RBP11.29□□□□□ -0.6
CPSF4-210ENST00000469897 ALDH16A1Q8IZ83 802 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 LRRC75AQ8NAA5 344 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 PCYOX1LQ8NBM8 494 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 OR2T12Q8NG77 320 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 KLF14Q8TD94 323 aaPredicted RBP11.29□□□□□ -0.6
CPSF4-210ENST00000469897 RAB1CQ92928 201 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 OR2H1Q9GZK4 316 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 SAP30LQ9HAJ7 183 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 G6PC2Q9NQR9 355 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 FGFR1OP2Q9NVK5 253 aa11.29□□□□□ -0.6
CPSF4-210ENST00000469897 LOC105371242A0A075B767 164 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 TRAV27A0A087WT01 109 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 A0A0A6YYJ9 748 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 A0A1W2PPL8 197 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 PLSCR5A0PG75 271 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 FAM220BPB1ANY3 271 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 CLDN25C9JDP6 229 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 DEAF1O75398 565 aaPredicted RBP11.28□□□□□ -0.6
CPSF4-210ENST00000469897 PNPP00491 289 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 SCG5P05408 212 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 CST2P09228 141 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 IFNA8P32881 189 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 GUCA1AP43080 201 aaPredicted RBP11.28□□□□□ -0.6
CPSF4-210ENST00000469897 TAF11Q15544 211 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 MAPRE2Q15555 327 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 SPRNQ5BIV9 151 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 ZNF774Q6NX45 483 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 TBPL2Q6SJ96 375 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 UNQ6126/PRO20091Q6UXV3 157 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 VTCN1Q7Z7D3 282 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 ABHD4Q8TB40 342 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 IPCEF1Q8WWN9 437 aaPredicted RBP11.28□□□□□ -0.6
CPSF4-210ENST00000469897 PRRC1Q96M27 445 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 ALG12Q9BV10 488 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 ARGLU1Q9NWB6 273 aaPredicted RBP11.28□□□□□ -0.6
CPSF4-210ENST00000469897 CMTM6Q9NX76 183 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 KLHL21Q9UJP4 597 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 PCDHB10Q9UN67 800 aa11.28□□□□□ -0.6
CPSF4-210ENST00000469897 HTR3EA5X5Y0 456 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 ZSCAN5BA6NJL1 495 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 EFCAB9A8MZ26 197 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 FFAR1O14842 300 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 UBOX5O94941 541 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 NR2C1P13056 603 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 H2AFXP16104 143 aaPredicted RBP11.27□□□□□ -0.61
CPSF4-210ENST00000469897 RBMXP38159 391 aaKnown RBP11.27□□□□□ -0.61
CPSF4-210ENST00000469897 PCBD1P61457 104 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 PPP1CBP62140 327 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 PRKCDQ05655 676 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 HNRNPA0Q13151 305 aaKnown RBP11.27□□□□□ -0.61
CPSF4-210ENST00000469897 FHL1Q13642 323 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 ENDOGQ14249 297 aaKnown RBP11.27□□□□□ -0.61
CPSF4-210ENST00000469897 TRAM2Q15035 370 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 FAM209AQ5JX71 171 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 MBNL2Q5VZF2 373 aaKnown RBP11.27□□□□□ -0.61
CPSF4-210ENST00000469897 RFPL4BQ6ZWI9 263 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 OAFQ86UD1 273 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 NRMQ8IXM6 262 aa11.27□□□□□ -0.61
CPSF4-210ENST00000469897 ZNF418Q8TF45 676 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms