RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 KLHL30Q0D2K2 578 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 KRTAP15-1Q3LI76 137 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 PAQR6Q6TCH4 344 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 TUBA1AQ71U36 451 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 EGFL6Q8IUX8 553 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 DDIASQ8IXT1 998 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 ZDHHC23Q8IYP9 409 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 FAM71E2Q8N5Q1 922 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 PNLDC1Q8NA58 520 aaKnown RBP3.79□□□□□ -1.8
HMGB1-207ENST00000468384 OR4K1Q8NGD4 311 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 OR52H1Q8NGJ2 320 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 RNF138Q8WVD3 245 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 TFB1MQ8WVM0 346 aaKnown RBP3.79□□□□□ -1.8
HMGB1-207ENST00000468384 CORO2AQ92828 525 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 RIT1Q92963 219 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 EME1Q96AY2 570 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 MOAP1Q96BY2 351 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 HARBI1Q96MB7 349 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 INTS14Q96SY0 518 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 LLPHQ9BRT6 129 aaKnown RBP3.79□□□□□ -1.8
HMGB1-207ENST00000468384 FUT8Q9BYC5 575 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 SIRPDQ9H106 197 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 AAMDCQ9H7C9 122 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 TUBA4BQ9H853 241 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 SPAG4Q9NPE6 437 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 PNRC2Q9NPJ4 139 aaKnown RBP3.79□□□□□ -1.8
HMGB1-207ENST00000468384 NRIP3Q9NQ35 241 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 RABL2AQ9UBK7 228 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-207ENST00000468384 TRMT6Q9UJA5 497 aaKnown RBP3.79□□□□□ -1.8
HMGB1-207ENST00000468384 KCNK7Q9Y2U2 307 aa3.79□□□□□ -1.8
HMGB1-207ENST00000468384 TMEM191CA6NGB0 347 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 NKX6-3A6NJ46 265 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 AKR1B15C9JRZ8 316 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-207ENST00000468384 TGOLN2O43493 480 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 UGDHO60701 494 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 CYTIPO60759 359 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 TFAP2AP05549 437 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 PNMA6AP0CW24 399 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-207ENST00000468384 ARSBP15848 533 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 CD22P20273 847 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 GPX3P22352 226 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 TNFSF8P32971 234 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 SFTPDP35247 375 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 ELK3P41970 407 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 ZNF140P52738 457 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-207ENST00000468384 CAPZA1P52907 286 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 UBE2NP61088 152 aaKnown RBP3.78□□□□□ -1.8
HMGB1-207ENST00000468384 SCN1BQ07699 218 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 STX5Q13190 355 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 LASP1Q14847 261 aaKnown RBP3.78□□□□□ -1.8
HMGB1-207ENST00000468384 DPYSL2Q16555 572 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 MEP1BQ16820 701 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 PNLIPRP3Q17RR3 467 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 ANKDD1AQ495B1 522 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 PIGWQ7Z7B1 504 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 C17orf64Q86WR6 236 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 GTPBP8Q8N3Z3 284 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-207ENST00000468384 POM121L12Q8N7R1 296 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 ZNF615Q8N8J6 731 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 CCNYQ8ND76 341 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 KLHL30-AS1Q8NEE0 82 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 IPMKQ8NFU5 416 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 TSPAN14Q8NG11 270 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 OSR1Q8TAX0 266 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-207ENST00000468384 RORBQ92753 470 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 ERGIC1Q969X5 290 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 CREB3L1Q96BA8 519 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 LYZL4Q96KX0 146 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 MCEEQ96PE7 176 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 ATP6V0BQ99437 205 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 ABHD6Q9BV23 337 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 CARD6Q9BX69 1037 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 TSSK1BQ9BXA7 367 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 LAT2Q9GZY6 243 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 KCNK15Q9H427 330 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 CRLF2Q9HC73 371 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 PAPOLBQ9NRJ5 636 aaKnown RBP3.78□□□□□ -1.8
HMGB1-207ENST00000468384 FAM153AQ9UHL3 310 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 VDAC3Q9Y277 283 aa3.78□□□□□ -1.8
HMGB1-207ENST00000468384 IGLV2-18A0A075B6J9 118 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 IGLV1-36A0A0B4J1U3 117 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 A0A1W2PRD5 423 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 A0A1W2PRF3 423 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 A0A1W2PRM7 423 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 NR5A2O00482 541 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 NPFFO15130 113 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 ACOX3O15254 700 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 TXNL1O43396 289 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 SCO2O43819 266 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 ZBTB14O43829 449 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 SEC22BO75396 215 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 LIPFP07098 398 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 SERPINA6P08185 405 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 HIST1H1TP22492 207 aaPredicted RBP3.77□□□□□ -1.81
HMGB1-207ENST00000468384 CERS1P27544 350 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 MPGP29372 298 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 MIPP30301 263 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 AHRP35869 848 aa3.77□□□□□ -1.81
HMGB1-207ENST00000468384 MDH2P40926 338 aaKnown RBP3.77□□□□□ -1.81
HMGB1-207ENST00000468384 BLCAPP62952 87 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms