RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 GAGE10A6NGK3 116 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 MPC1LP0DKB6 136 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 CDX1P47902 265 aaPredicted RBP8.28□□□□□ -1.08
NIPBL-202ENST00000448238 RHOBP62745 196 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 IZUMO4Q1ZYL8 232 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 BEND2Q8NDZ0 799 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 XYLT2Q9H1B5 865 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 GALR3O60755 368 aaPredicted RBP8.28□□□□□ -1.08
NIPBL-202ENST00000448238 ZNF354AO60765 605 aaPredicted RBP8.28□□□□□ -1.08
NIPBL-202ENST00000448238 TCRBP04435 133 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 CD40P25942 277 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 SLC10A2Q12908 348 aaPredicted RBP8.28□□□□□ -1.08
NIPBL-202ENST00000448238 OR1C1Q15619 314 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 ARHGEF39Q8N4T4 335 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 NXPE3Q969Y0 559 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 PSG11Q9UQ72 335 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 B3GALT5Q9Y2C3 310 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 CDC42BPAQ5VT25 1732 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 ELOA3CA0A087WX78 387 aaPredicted RBP8.28□□□□□ -1.08
NIPBL-202ENST00000448238 FCN1O00602 326 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 VAMP5O95183 116 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 PSMB6P28072 239 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 SPANXN5Q5MJ07 72 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 FAM71E1Q6IPT2 247 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 OR5AS1Q8N127 324 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 TMEM123Q8N131 208 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 TMEM19Q96HH6 336 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 WFIKKN1Q96NZ8 548 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 NDUFB11Q9NX14 153 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 CSNK1G3Q9Y6M4 447 aa8.28□□□□□ -1.08
NIPBL-202ENST00000448238 GLRA1P23415 457 aa8.27□□□□□ -1.08
NIPBL-202ENST00000448238 ACAA2P42765 397 aaKnown RBP8.27□□□□□ -1.08
NIPBL-202ENST00000448238 NRLP54845 237 aa8.27□□□□□ -1.08
NIPBL-202ENST00000448238 NNATQ16517 81 aa8.27□□□□□ -1.08
NIPBL-202ENST00000448238 MISPQ8IVT2 679 aa8.27□□□□□ -1.08
NIPBL-202ENST00000448238 RTP4Q96DX8 246 aa8.27□□□□□ -1.08
NIPBL-202ENST00000448238 SERINC2Q96SA4 455 aa8.27□□□□□ -1.08
NIPBL-202ENST00000448238 C19orf43Q9BQ61 176 aa8.27□□□□□ -1.08
NIPBL-202ENST00000448238 BCO2Q9BYV7 579 aa8.27□□□□□ -1.08
NIPBL-202ENST00000448238 ZNF768Q9H5H4 540 aaKnown RBP8.27□□□□□ -1.08
NIPBL-202ENST00000448238 TMEM233B4DJY2 109 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 CLDN7O95471 211 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 CRYBA1P05813 215 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 FKBP2P26885 142 aaKnown RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 FAM57BQ71RH2 274 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 BVESQ8NE79 360 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 OR2I1PQ8NGU4 316 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 DNAJA3Q96EY1 480 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 TMEM101Q96IK0 257 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 KCNK6Q9Y257 313 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 ZC3H12DA2A288 527 aaKnown RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 OR4C45A6NMZ5 311 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 DCAF7P61962 342 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 ARF6P62330 175 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 ACKR1Q16570 336 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 PHLDA2Q53GA4 152 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 SFXN4Q6P4A7 337 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 GJC3Q8NFK1 279 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 OR4F17Q8NGA8 305 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 BCL7CQ8WUZ0 217 aaPredicted RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 POM121L2Q96KW2 1035 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 NXF2Q9GZY0 626 aaKnown RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 GPR34Q9UPC5 381 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 C1QBP02746 253 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 CTSLP07711 333 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 BMP1P13497 986 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 BCL3P20749 454 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 GDF5P43026 501 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 ZNF805Q5CZA5 627 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 SH3RF2Q8TEC5 729 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 TFAP2CQ92754 450 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 WDR92Q96MX6 357 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 ADAT1Q9BUB4 502 aaKnown RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 KCNK12Q9HB15 430 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 THYN1Q9P016 225 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 CTSFQ9UBX1 484 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 RCL1Q9Y2P8 373 aaKnown RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 MRPS28Q9Y2Q9 187 aaKnown RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 FREM3P0C091 2139 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 FZD6O60353 706 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 DUS4LO95620 317 aaKnown RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 CR2P20023 1033 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 MS4A2Q01362 244 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 PRDX4Q13162 271 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 TBC1D28Q2M2D7 210 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 APOBEC3HQ6NTF7 200 aaKnown RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 PIM3Q86V86 326 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 LINC00116Q8NCU8 138 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 SDR9C7Q8NEX9 313 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 FAHD2AQ96GK7 314 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 TMEM70Q9BUB7 260 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 PTHLHP12272 177 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 CPEP16870 476 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 TBPL1P62380 186 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 MLF2Q15773 248 aaPredicted RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 CTU2Q2VPK5 515 aaKnown RBP8.27□□□□□ -1.09
NIPBL-202ENST00000448238 ANKRD16Q6P6B7 361 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 TAC4Q86UU9 113 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 OR5D18Q8NGL1 313 aa8.27□□□□□ -1.09
NIPBL-202ENST00000448238 EMG1Q92979 244 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms