RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 AVPP01185 164 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 IGHV1-46P01743 117 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 IFI30P13284 250 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 WNT5AP41221 380 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 GZMMP51124 257 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 MRPS34P82930 218 aaKnown RBP12.34□□□□□ -0.43
SDC1-204ENST00000429035 LAPTM4AQ15012 233 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 ARMC4Q5T2S8 1044 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 UNQ6126/PRO20091Q6UXV3 157 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 PEG10Q86TG7 708 aaKnown RBP12.34□□□□□ -0.43
SDC1-204ENST00000429035 BPIFB2Q8N4F0 458 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 CLDN22Q8N7P3 220 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 ZFAND2BQ8WV99 257 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 GEMIN6Q8WXD5 167 aaKnown RBP12.34□□□□□ -0.43
SDC1-204ENST00000429035 STON2Q8WXE9 905 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 GCDHQ92947 438 aaPredicted RBP12.34□□□□□ -0.43
SDC1-204ENST00000429035 NABP1Q96AH0 204 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 SLC6A7Q99884 636 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 SH3GL1Q99961 368 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 TMEM120AQ9BXJ8 343 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 TMPRSS13Q9BYE2 586 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 PLA2G12AQ9BZM1 189 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 OR2J1Q9GZK6 312 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 UGT2A1Q9Y4X1 527 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 ZSCAN5BA6NJL1 495 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 TIMM8AO60220 97 aaPredicted RBP12.33□□□□□ -0.44
SDC1-204ENST00000429035 MGRN1O60291 552 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 IFNA14P01570 189 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 IGHV3-13P01766 116 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 LAP3P28838 519 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 GUCA1AP43080 201 aaPredicted RBP12.33□□□□□ -0.44
SDC1-204ENST00000429035 HILS1P60008 231 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 CTXN1P60606 82 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 PPP1CBP62140 327 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 LCN2P80188 198 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 PSG4Q00888 419 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 HNRNPA0Q13151 305 aaKnown RBP12.33□□□□□ -0.44
SDC1-204ENST00000429035 TMEM255AQ5JRV8 349 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 FAM209AQ5JX71 171 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 ERICH5Q6P6B1 374 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 C1orf229Q6ZS94 237 aaPredicted RBP12.33□□□□□ -0.44
SDC1-204ENST00000429035 C1QL2Q7Z5L3 287 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 C3orf56Q8N813 242 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 OR8J3Q8NGG0 315 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 C22orf15Q8WYQ4 148 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 LRRC58Q96CX6 371 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 POM121L2Q96KW2 1035 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 JMJD8Q96S16 334 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 SEPHS2Q99611 448 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 SIKE1Q9BRV8 207 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 RBM4Q9BWF3 364 aaKnown RBP12.33□□□□□ -0.44
SDC1-204ENST00000429035 SUCNR1Q9BXA5 334 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 POLR2J2Q9GZM3 115 aaKnown RBP12.33□□□□□ -0.44
SDC1-204ENST00000429035 EGLN1Q9GZT9 426 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 POLR2J3Q9H1A7 115 aaKnown RBP12.33□□□□□ -0.44
SDC1-204ENST00000429035 TXNIPQ9H3M7 391 aa12.33□□□□□ -0.44
SDC1-204ENST00000429035 LOC100509620A0A075B734 347 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 TRAV27A0A087WT01 109 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 H7C1C5 153 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 FXYD1O00168 92 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 DEAF1O75398 565 aaPredicted RBP12.32□□□□□ -0.44
SDC1-204ENST00000429035 IFNA8P32881 189 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 YAP1P46937 504 aaKnown RBP12.32□□□□□ -0.44
SDC1-204ENST00000429035 ARHGDIAP52565 204 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 ZNF133P52736 654 aaPredicted RBP12.32□□□□□ -0.44
SDC1-204ENST00000429035 LCN6P62502 163 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 CYBRD1Q53TN4 286 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 ZNF774Q6NX45 483 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 SLC25A47Q6Q0C1 308 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 CALHM3Q86XJ0 350 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 ALDH16A1Q8IZ83 802 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 KLF14Q8TD94 323 aaPredicted RBP12.32□□□□□ -0.44
SDC1-204ENST00000429035 ST7LQ8TDW4 575 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 MARS2Q96GW9 593 aaKnown RBP12.32□□□□□ -0.44
SDC1-204ENST00000429035 PRRC1Q96M27 445 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 RBP7Q96R05 134 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 DCLRE1CQ96SD1 692 aaKnown RBP12.32□□□□□ -0.44
SDC1-204ENST00000429035 ALG12Q9BV10 488 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 OR2H1Q9GZK4 316 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 WNT5BQ9H1J7 359 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 SMURF2Q9HAU4 748 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 MSL2Q9HCI7 577 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 HIF3AQ9Y2N7 669 aa12.32□□□□□ -0.44
SDC1-204ENST00000429035 FAM220BPB1ANY3 271 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 J3QLI3 93 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 ABHD16AO95870 558 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 TROVE2P10155 538 aaKnown RBP eCLIP12.31□□□□□ -0.44
SDC1-204ENST00000429035 MMP15P51511 669 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 RPL27P61353 136 aaKnown RBP12.31□□□□□ -0.44
SDC1-204ENST00000429035 TNFAIP6P98066 277 aaPredicted RBP12.31□□□□□ -0.44
SDC1-204ENST00000429035 SLC3A1Q07837 685 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 ST3GAL3Q11203 375 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 MAPRE2Q15555 327 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 ZMAT1Q5H9K5 638 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 OR13C2Q8NGS9 318 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 OR51A7Q8NH64 312 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 NANPQ8TBE9 248 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 BPIFA2Q96DR5 249 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 C7orf69Q9H7B7 122 aa12.31□□□□□ -0.44
SDC1-204ENST00000429035 ELOVL3Q9HB03 270 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms