RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 TNRC6BQ9UPQ9 1833 aaKnown RBP7.5□□□□□ -1.21
USP54-203ENST00000418501 H3BUI4 141 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 TBX1O43435 398 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 SYT7O43581 403 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 HPNP05981 417 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 PSMB10P40306 273 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 MEOX1P50221 254 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 LINC01590Q5TEZ4 76 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 B3GNTL1Q67FW5 361 aaPredicted RBP7.5□□□□□ -1.21
USP54-203ENST00000418501 SFXN4Q6P4A7 337 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 OR5D14Q8NGL3 314 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 HAS2Q92819 552 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 ABHD6Q9BV23 337 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 NELFAQ9H3P2 528 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 ANKRD10Q9NXR5 420 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 OR52A1Q9UKL2 312 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 FBXL3Q9UKT7 428 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 SEC16AO15027 2179 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 IGLV1-36A0A0B4J1U3 117 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 A6NL46 340 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 TNFSF11O14788 317 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 RRP8O43159 456 aaKnown RBP7.5□□□□□ -1.21
USP54-203ENST00000418501 SULT1B1O43704 296 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 NME2P1O60361 137 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 CELA2AP08217 269 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 SRMP19623 302 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 NME2P22392 152 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 CCL11P51671 97 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 EFNA3P52797 238 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 DOC2BQ14184 412 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 RAB11BQ15907 218 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 SLC36A2Q495M3 483 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 CPT1CQ8TCG5 803 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 SLAMF6Q96DU3 332 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 GRIP1Q9Y3R0 1128 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 FZD7O75084 574 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 WDPCPO95876 746 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 BMP4P12644 408 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 ART1P52961 327 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 EIF2S3LQ2VIR3 472 aaKnown RBP7.5□□□□□ -1.21
USP54-203ENST00000418501 UBE2NLQ5JXB2 153 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 LRRC69Q6ZNQ3 347 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 SAMD12Q8N8I0 201 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 DDOQ99489 341 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 LRFN3Q9BTN0 628 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 MED29Q9NX70 200 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 EXTL2Q9UBQ6 330 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 ZNF587BE7ETH6 402 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 CXCL13O43927 109 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 DKK1O94907 266 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 CRYABP02511 175 aaKnown RBP7.5□□□□□ -1.21
USP54-203ENST00000418501 TFP02787 698 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 CTLA4P16410 223 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 MNDAP41218 407 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 CLDN15P56746 228 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 FOXL2P58012 376 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 KCNMB1Q16558 191 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 OR7E24Q6IFN5 339 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 RPTNQ6XPR3 784 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 SYT9Q86SS6 491 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 PARP16Q8N5Y8 322 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 SLC26A10Q8NG04 563 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 OR5M1Q8NGP8 315 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 TRMT10AQ8TBZ6 339 aaKnown RBP7.5□□□□□ -1.21
USP54-203ENST00000418501 C11orf40Q8WZ69 217 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 DNAJA3Q96EY1 480 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 C4orf45Q96LM5 186 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 TSSK2Q96PF2 358 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 TTTY10Q9BZA0 68 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 MOV10Q9HCE1 1003 aaKnown RBP7.5□□□□□ -1.21
USP54-203ENST00000418501 SH2D2AQ9NP31 389 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 ABCB9Q9NP78 766 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 ACKR4Q9NPB9 350 aa7.5□□□□□ -1.21
USP54-203ENST00000418501 CHD9Q3L8U1 2897 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 hCG_2014768A0A024R1R8 64 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 J3QRK9 145 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 APEX1P27695 318 aaKnown RBP7.49□□□□□ -1.21
USP54-203ENST00000418501 SLC6A9P48067 706 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 PITPNBP48739 271 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 RAB25P57735 213 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 WIPI1Q5MNZ9 446 aaPredicted RBP7.49□□□□□ -1.21
USP54-203ENST00000418501 CREB3L2Q70SY1 520 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 DOK3Q7L591 496 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 CCDC36Q8IYA8 594 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 FTMTQ8N4E7 242 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 EXD3Q8N9H8 876 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 RTN4RQ9BZR6 473 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 ST6GALNAC2Q9UJ37 374 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 SF3B6Q9Y3B4 125 aaKnown RBP7.49□□□□□ -1.21
USP54-203ENST00000418501 EMC9Q9Y3B6 208 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 ZNF175Q9Y473 711 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 TIMM10BQ9Y5J6 103 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 TP53BP1Q12888 1972 aaPredicted RBP7.49□□□□□ -1.21
USP54-203ENST00000418501 TRGV5A0A0B4J1U4 118 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 BOLA2-SMG1P6H3BVE0 249 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 FHL1Q13642 323 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 RIPPLY2Q5TAB7 128 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 OR2A2Q6IF42 318 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 CCDC190Q86UF4 302 aa7.49□□□□□ -1.21
USP54-203ENST00000418501 CDH24Q86UP0 819 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms