RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SMAD2Q15796 467 aaKnown RBP18.92■□□□□ 0.62
CTCF-202ENST00000401394 KCTD9Q7L273 389 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 PPP1R1CQ8WVI7 109 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 COMMD4Q9H0A8 199 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 Q9N2J8 555 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 KLK13Q9UKR3 277 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 EEF1E1-BLOC1S5C9J1V9 151 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 AK1P00568 194 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 HLA-AP01891 365 aaKnown RBP18.92■□□□□ 0.62
CTCF-202ENST00000401394 CD1AP06126 327 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 GMFBP60983 142 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 ZNF141Q15928 474 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 ZNF595Q8IYB9 648 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 OR13C8Q8NGS7 320 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 ASF1BQ9NVP2 202 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 HPF1Q9NWY4 346 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 FBXO9Q9UK97 447 aaPredicted RBP18.92■□□□□ 0.62
CTCF-202ENST00000401394 PLCL2Q9UPR0 1127 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 ETV7Q9Y603 341 aa18.92■□□□□ 0.62
CTCF-202ENST00000401394 OR6C76A6NM76 312 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 ADCYAP1P18509 176 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 RAB11BQ15907 218 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 ZCCHC12Q6PEW1 402 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 NAXDQ8IW45 347 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 JAGN1Q8N5M9 183 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 SLC37A2Q8TED4 501 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 PHYHIPQ92561 330 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 LMF2Q9BU23 707 aaKnown RBP18.91■□□□□ 0.62
CTCF-202ENST00000401394 OR10A5Q9H207 317 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 FBXL21Q9UKT6 434 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 ATXN7L1Q9ULK2 861 aaPredicted RBP18.91■□□□□ 0.62
CTCF-202ENST00000401394 VSIG4Q9Y279 399 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 RNF222A6NCQ9 220 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 MNDAP41218 407 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 CAPZA2P47755 286 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 PRPS1P60891 318 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 MRPS10P82664 201 aaKnown RBP18.91■□□□□ 0.62
CTCF-202ENST00000401394 PDSS1Q5T2R2 415 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 LINC00518Q8N0U6 118 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 ADOQ96SZ5 270 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 MED9Q9NWA0 146 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 ASXL3Q9C0F0 2248 aa18.91■□□□□ 0.62
CTCF-202ENST00000401394 KCNJ13O60928 360 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 ITGB2P05107 769 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 HPGDP15428 266 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 RPA2P15927 270 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 KRT77Q7Z794 578 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 ATG4DQ86TL0 474 aaPredicted RBP18.9■□□□□ 0.62
CTCF-202ENST00000401394 WDFY1Q8IWB7 410 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 ZSCAN1Q8NBB4 408 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 ZNF563Q8TA94 476 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 ELSPBP1Q96BH3 223 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 INTS14Q96SY0 518 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 RASL12Q9NYN1 266 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 PCDHB10Q9UN67 800 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 HIF3AQ9Y2N7 669 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 FREM2Q5SZK8 3169 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 BRWD1Q9NSI6 2320 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 A0A1W2PQF6 199 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 BDKRB2P30411 391 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 PRAMEF17Q5VTA0 474 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 CLRN3Q8NCR9 226 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 ZNF417Q8TAU3 575 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 GPX8Q8TED1 209 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 MRGPRFQ96AM1 343 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 SCARF2Q96GP6 870 aaPredicted RBP18.9■□□□□ 0.62
CTCF-202ENST00000401394 NKX6-2Q9C056 277 aaPredicted RBP18.9■□□□□ 0.62
CTCF-202ENST00000401394 IL23AQ9NPF7 189 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 SLC16A7O60669 478 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 MAPK3P27361 379 aaPredicted RBP18.9■□□□□ 0.62
CTCF-202ENST00000401394 RAB38P57729 211 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 YAF2Q8IY57 180 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 PUSL1Q8N0Z8 303 aaKnown RBP18.9■□□□□ 0.62
CTCF-202ENST00000401394 BPIFB2Q8N4F0 458 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 ADAD2Q8NCV1 583 aaKnown RBP18.9■□□□□ 0.62
CTCF-202ENST00000401394 WDR92Q96MX6 357 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 CST11Q9H112 138 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 SFXN1Q9H9B4 322 aa18.9■□□□□ 0.62
CTCF-202ENST00000401394 DOCK8Q8NF50 2099 aa18.89■□□□□ 0.62
CTCF-202ENST00000401394 LDOC1O95751 146 aaPredicted RBP18.89■□□□□ 0.61
CTCF-202ENST00000401394 ASAH2BP0C7U1 165 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 GPR3P46089 330 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 SKP1P63208 163 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 NFATC4Q14934 902 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 TMEM200AQ86VY9 491 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 LINC00346Q8IVM7 164 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 TMEM151BQ8IW70 566 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 PRSS58Q8IYP2 241 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 ZFP82Q8N141 532 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 SDR16C5Q8N3Y7 309 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 C2CD4CQ8TF44 421 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 NUDCD2Q8WVJ2 157 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 DCBLD2Q96PD2 775 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 SPACA5Q96QH8 159 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 LINC01387J3KSC0 135 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 NUDT14O95848 222 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 DCNP07585 359 aaKnown RBP18.89■□□□□ 0.61
CTCF-202ENST00000401394 ZNF735P0CB33 412 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 PPP1R1AQ13522 171 aa18.89■□□□□ 0.61
CTCF-202ENST00000401394 EIF2B1Q14232 305 aaKnown RBP18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms