RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ADIPOR1Q96A54 375 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 HYLS1Q96M11 299 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 ZNF251Q9BRH9 671 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 CRB3Q9BUF7 120 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 ADAM19Q9H013 955 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 FGF21Q9NSA1 209 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 UFSP2Q9NUQ7 469 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 SUSD2Q9UGT4 822 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 ZNF346Q9UL40 294 aaKnown RBP8.72□□□□□ -1.01
COL6A3-204ENST00000392003 EYSQ5T1H1 3165 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 TCRBV16S1A1N1A0A5B0 115 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 DNASE2O00115 360 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-204ENST00000392003 CTDSPLO15194 276 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 KHDRBS3O75525 346 aaKnown RBP8.72□□□□□ -1.01
COL6A3-204ENST00000392003 EGR4Q05215 589 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 LTBQ06643 244 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 LRRN1Q6UXK5 716 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 FCRLAQ7L513 359 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 CHMP1BQ7LBR1 199 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 PRSS45Q7RTY3 260 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 TCEAL3Q969E4 200 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 ORAI1Q96D31 301 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 DNAJA3Q96EY1 480 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 TSPAN32Q96QS1 320 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 OR2M2Q96R28 347 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 SYT4Q9H2B2 425 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 MLXQ9UH92 298 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 FKBP7Q9Y680 259 aa8.72□□□□□ -1.01
COL6A3-204ENST00000392003 IGKV3D-11A0A0A0MRZ8 115 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 A0A1B0GX78 115 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 A0A1W2PQD3 144 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 ALG1L2C9J202 215 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 GSTZ1O43708 216 aaPredicted RBP8.71□□□□□ -1.01
COL6A3-204ENST00000392003 KRT33AO76009 404 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 AHSA1O95433 338 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 MT-ATP6P00846 226 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 RAB40ALP0C0E4 278 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 TFPIP10646 304 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 GDNFP39905 211 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 POLR2HP52434 150 aaKnown RBP8.71□□□□□ -1.01
COL6A3-204ENST00000392003 PNLIPRP2P54317 469 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 NANOS3P60323 173 aaKnown RBP8.71□□□□□ -1.01
COL6A3-204ENST00000392003 DYRK1AQ13627 763 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 FCN2Q15485 313 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 MESTQ5EB52 335 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 SHISA6Q6ZSJ9 500 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 DPY19L4Q7Z388 723 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 ADGRG3Q86Y34 549 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 LIX1LQ8IVB5 337 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 SLC25A45Q8N413 288 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 GPR148Q8TDV2 347 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 SMIM4Q8WVI0 70 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 FCAMRQ8WWV6 532 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 RAB40AQ8WXH6 277 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 DNASE2BQ8WZ79 361 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 CCDC74AQ96AQ1 378 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 PFDN5Q99471 154 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 WWTR1Q9GZV5 400 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 DUSP15Q9H1R2 295 aaPredicted RBP8.71□□□□□ -1.01
COL6A3-204ENST00000392003 OR51J1Q9H342 316 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 LDAHQ9H6V9 325 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 MRM2Q9UI43 246 aaKnown RBP8.71□□□□□ -1.01
COL6A3-204ENST00000392003 GTF2A1LQ9UNN4 478 aa8.71□□□□□ -1.01
COL6A3-204ENST00000392003 C4orf47A7E2U8 309 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 HRGP04196 525 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 CALCBP10092 127 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 ART1P52961 327 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 EGR3Q06889 387 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 RASGEF1BQ0VAM2 473 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 SLC36A2Q495M3 483 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 ACER2Q5QJU3 275 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 YOD1Q5VVQ6 348 aaPredicted RBP8.71□□□□□ -1.02
COL6A3-204ENST00000392003 CDC20BQ86Y33 519 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 OR1N1Q8NGS0 311 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 ZNF417Q8TAU3 575 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 CLDN23Q96B33 292 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 CMSS1Q9BQ75 279 aaKnown RBP8.71□□□□□ -1.02
COL6A3-204ENST00000392003 TSPAN10Q9H1Z9 355 aaPredicted RBP8.71□□□□□ -1.02
COL6A3-204ENST00000392003 UNKLQ9H9P5 680 aaKnown RBP8.71□□□□□ -1.02
COL6A3-204ENST00000392003 NKIRAS2Q9NYR9 191 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 TMED7-TICAM2A0A0A6YYA0 188 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 OR6C76A6NM76 312 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 TMEM212A6NML5 194 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 PIN1P1O15428 100 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 MT-ND4P03905 459 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 PRF1P14222 555 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 FOLR1P15328 257 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 NUP62P37198 522 aaPredicted RBP8.71□□□□□ -1.02
COL6A3-204ENST00000392003 PER3P56645 1201 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 MRPS10P82664 201 aaKnown RBP8.71□□□□□ -1.02
COL6A3-204ENST00000392003 TMEM69Q5SWH9 247 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 FAM69AQ5T7M9 428 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 MTFR2Q6P444 385 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 CFAP161Q6P656 301 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 TEX261Q6UWH6 196 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.71□□□□□ -1.02
COL6A3-204ENST00000392003 TMPRSS12Q86WS5 348 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 OR6V1Q8N148 313 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 D2HGDHQ8N465 521 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 KDF1Q8NAX2 398 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms