RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 RBP7Q96R05 134 aa8.6□□□□□ -1.03
TRIM39-202ENST00000376659 MRPL13Q9BYD1 178 aaKnown RBP8.6□□□□□ -1.03
TRIM39-202ENST00000376659 OR8D2Q9GZM6 311 aa8.6□□□□□ -1.03
TRIM39-202ENST00000376659 EIF3KQ9UBQ5 218 aaKnown RBP8.6□□□□□ -1.03
TRIM39-202ENST00000376659 MTFP1Q9UDX5 166 aa8.6□□□□□ -1.03
TRIM39-202ENST00000376659 LRP12Q9Y561 859 aa8.6□□□□□ -1.03
TRIM39-202ENST00000376659 FREM3P0C091 2139 aa8.6□□□□□ -1.03
TRIM39-202ENST00000376659 ITGA10O75578 1167 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ZNF432O94892 652 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 IL5P05113 134 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 MYF5P13349 255 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ICAM2P13598 275 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 MAPK3P27361 379 aaPredicted RBP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 HNRNPKP61978 463 aaKnown RBP eCLIP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 RNF4P78317 190 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 HIST3H3Q16695 136 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 RHBDD2Q6NTF9 364 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 CORO6Q6QEF8 472 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 GRINAQ7Z429 371 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 FOXQ1Q9C009 403 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 SRA1Q9HD15 236 aaKnown RBP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 SOHLH2Q9NX45 425 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 CA14Q9ULX7 337 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 GGT3PA6NGU5 568 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 A8MUA0 341 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 A8MVM7 634 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ECDO95905 644 aaPredicted RBP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 GABRA1P14867 456 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 VEGFCP49767 419 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 NR0B1P51843 470 aaKnown RBP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 RNASE12Q5GAN4 147 aaKnown RBP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 LCN10Q6JVE6 187 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 KRT74Q7RTS7 529 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 SERPINA12Q8IW75 414 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 CLEC1AQ8NC01 280 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ASB17Q8WXJ9 295 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 NUDT22Q9BRQ3 303 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ACTR6Q9GZN1 396 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 FAM206AQ9NX38 181 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 KIF26BQ2KJY2 2108 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 RP1P56715 2156 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ABCA7Q8IZY2 2146 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 SYNDIG1LA6NDD5 238 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 TOX3O15405 576 aaPredicted RBP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 LMX1BO60663 402 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 KRT33AO76009 404 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 AQP8O94778 261 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 MPZL1O95297 269 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 TACSTD2P09758 323 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ANXA3P12429 323 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 PNLIPP16233 465 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 PSMB1P20618 241 aaKnown RBP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 SLC26A5P58743 744 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 MEP1BQ16820 701 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ALKBH2Q6NS38 261 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 C16orf47Q6ZP98 133 aaPredicted RBP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 GPX8Q8TED1 209 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 TMEM106AQ96A25 262 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ZFP3Q96NJ6 502 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 EDEM2Q9BV94 578 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 TMPRSS13Q9BYE2 586 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 OR11A1Q9GZK7 315 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 NARFLQ9H6Q4 476 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 RANBP3Q9H6Z4 567 aaPredicted RBP8.59□□□□□ -1.03
TRIM39-202ENST00000376659 B3GNT2Q9NY97 397 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 MGAT4CQ9UBM8 478 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 LAMP5Q9UJQ1 280 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 ANAPC10Q9UM13 185 aa8.59□□□□□ -1.03
TRIM39-202ENST00000376659 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 A0A1B0GVI7 797 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 SLC17A2O00624 439 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 PRAF2O60831 178 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 POLR2GP62487 172 aaKnown RBP eCLIP8.58□□□□□ -1.04
TRIM39-202ENST00000376659 SRSF4Q08170 494 aaKnown RBP8.58□□□□□ -1.04
TRIM39-202ENST00000376659 PLCXD2Q0VAA5 305 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 SNTA1Q13424 505 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 TMEM225Q6GV28 225 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 LRRN1Q6UXK5 716 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 NUBPLQ8TB37 319 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 MRPL48Q96GC5 212 aaKnown RBP8.58□□□□□ -1.04
TRIM39-202ENST00000376659 ADAD1Q96M93 576 aaKnown RBP8.58□□□□□ -1.04
TRIM39-202ENST00000376659 MED28Q9H204 178 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 PNRC2Q9NPJ4 139 aaKnown RBP8.58□□□□□ -1.04
TRIM39-202ENST00000376659 PISDQ9UG56 409 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 MGAT4AQ9UM21 535 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 SLC22A13Q9Y226 551 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 MRPS18BQ9Y676 258 aaKnown RBP8.58□□□□□ -1.04
TRIM39-202ENST00000376659 CEP290O15078 2479 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 HCRTR2O43614 444 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 SERPINI2O75830 405 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 RPP14O95059 124 aaKnown RBP8.58□□□□□ -1.04
TRIM39-202ENST00000376659 CFDP00746 253 aaPredicted RBP8.58□□□□□ -1.04
TRIM39-202ENST00000376659 CXCL2P19875 107 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 MPZP25189 248 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 SNTB2Q13425 540 aaKnown RBP8.58□□□□□ -1.04
TRIM39-202ENST00000376659 COL28A1Q2UY09 1125 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 C1orf100Q5SVJ3 147 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 BEST4Q8NFU0 473 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 OR6N2Q8NGY6 317 aa8.58□□□□□ -1.04
TRIM39-202ENST00000376659 OR52N5Q8NH56 324 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms