RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TSSK4Q6SA08 328 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 MAMSTRQ6ZN01 415 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 OR52N5Q8NH56 324 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 RNF138Q8WVD3 245 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 OR10A4Q9H209 315 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 RARRES3Q9UL19 164 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 SIT1Q9Y3P8 196 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 MEIKINA0A087WXM9 373 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 FREM3P0C091 2139 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 NAGAP17050 411 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 DHPSP49366 369 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 EFNB2P52799 333 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 FMODQ06828 376 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 ANKRD16Q6P6B7 361 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 NDUFAF7Q7L592 441 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 SLC26A10Q8NG04 563 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 EMC3Q9P0I2 261 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 MGAT4AQ9UM21 535 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 TNRC18O15417 2968 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 VSTM2BA6NLU5 285 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 NPIPA5E9PKD4 350 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 ZNF208O43345 1280 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 SIGLEC6O43699 453 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 SSNA1O43805 119 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 FBXO45P0C2W1 286 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 VEGFCP49767 419 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 FOXF1Q12946 379 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 ANGPT1Q15389 498 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 LYSMD4Q5XG99 296 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 ZNF385CQ66K41 422 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 PIAS4Q8N2W9 510 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 OR11H4Q8NGC9 324 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 ZNF431Q8TF32 576 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 ASB5Q8WWX0 329 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 KCNK17Q96T54 332 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 NPIPA1Q9UND3 350 aa18.67■□□□□ 0.58
CCDC88B-203ENST00000359902 SRSF10O75494 262 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 FOSL2P15408 326 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 DAP3P51398 398 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 MAP2K6P52564 334 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 FAAP20Q6NZ36 180 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 CPEB2Q7Z5Q1 589 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 BIVMQ86UB2 503 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 SAP25Q8TEE9 199 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 TTC9Q92623 222 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 CHST11Q9NPF2 352 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 DHDHQ9UQ10 334 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 SHISA8B8ZZ34 492 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 SLC17A2O00624 439 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 EFNA2O43921 213 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 CTAG2O75638 210 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 TGM6O95932 706 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 POU3F4P49335 361 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 ZP1P60852 638 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 HSF1Q00613 529 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 TLE3Q04726 772 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 C2orf76Q3KRA6 126 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 TMEM225Q6GV28 225 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 FAM166AQ6J272 317 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 LCN10Q6JVE6 187 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 LUZP2Q86TE4 346 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 OR5L2Q8NGL0 311 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 PIGKQ92643 395 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 SNAPC3Q92966 411 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 DDIT4LQ96D03 193 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 NOX3Q9HBY0 568 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 FSCN3Q9NQT6 498 aa18.66■□□□□ 0.58
CCDC88B-203ENST00000359902 IGKV1D-43A0A0B4J1Z2 117 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 A0A1B0GVI7 797 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 NPIPB13A6NJU9 1138 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 TTLL8A6PVC2 850 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 NPIPB4C9JG80 1138 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 ETV2O00321 342 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 PRAF2O60831 178 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 ONECUT2O95948 504 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 ZNF823P16415 610 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 POU3F1Q03052 451 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 RAB11BQ15907 218 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 PCK2Q16822 640 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 FAM3DQ96BQ1 224 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 CCDC74BQ96LY2 380 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 MED29Q9NX70 200 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 KLRF1Q9NZS2 232 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 FBXL3Q9UKT7 428 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 GGT3PA6NGU5 568 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 LIPT2A6NK58 231 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 ARPC1BO15143 372 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 ALX3O95076 343 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 CAMK2DQ13557 499 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 LINC00303Q3SY05 128 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 DNM1P34Q6PK57 102 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 SEZ6L2Q6UXD5 910 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 Q6ZTK2 550 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 ST7LQ8TDW4 575 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 SPSB2Q99619 263 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 KCNK15Q9H427 330 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 PTTG3PQ9NZH4 202 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 SLC23A1Q9UHI7 598 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 EMC9Q9Y3B6 208 aa18.65■□□□□ 0.58
CCDC88B-203ENST00000359902 R4GMQ9 66 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms