RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SNX8Q9Y5X2 465 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 APC2O95996 2303 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 DSCAMO60469 2012 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ALPK2Q86TB3 2170 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TRAV8-7A0A075B6U6 113 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 A0A1B0GWJ7 208 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SYNDIG1LA6NDD5 238 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR6C70A6NIJ9 312 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 LRRC72A6NJI9 287 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR4C45A6NMZ5 311 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 C17orf100A8MU93 164 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CTDSPLO15194 276 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SELENOFO60613 162 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 UTS2O95399 124 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 RAF1P04049 648 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 IL6RP08887 468 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 TMIGD3P0DMS9 266 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF12P17014 697 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ELK1P19419 428 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ALOX5APP20292 161 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 FBLP22087 321 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 LMO1P25800 156 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GTF2E2P29084 291 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 SDC2P34741 201 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 PLA2G5P39877 138 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 AVPR1BP47901 424 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 DIO1P49895 249 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR12D2P58182 307 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CXADRP78310 365 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CCL7P80098 99 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MFGE8Q08431 387 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 MFAP5Q13361 173 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TGIF1Q15583 401 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ETFDHQ16134 617 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 AMZ1Q400G9 498 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 LIPKQ5VXJ0 399 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TMEM71Q6P5X7 295 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SLC36A4Q6YBV0 504 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 USP43Q70EL4 1123 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 H1FNTQ75WM6 255 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 C16orf62Q7Z3J2 963 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 LHFPL3Q86UP9 236 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 KLBQ86Z14 1044 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GID4Q8IVV7 300 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TMEM123Q8N131 208 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SUMF1Q8NBK3 374 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF555Q8NEP9 628 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR4M2Q8NGB6 313 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 OR6C4Q8NGE1 309 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 NUBPLQ8TB37 319 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ADAMTS14Q8WXS8 1223 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SLC9A6Q92581 669 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 RORBQ92753 470 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 KIAA1143Q96AT1 154 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 RASD2Q96D21 266 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ORAI1Q96D31 301 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 SMIM19Q96E16 107 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 BOD1Q96IK1 185 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 TSSK2Q96PF2 358 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 DERL3Q96Q80 235 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CCNL2Q96S94 520 aaPredicted RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF607Q96SK3 696 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 APOL4Q9BPW4 351 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ZNF559Q9BR84 538 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MARVELD1Q9BSK0 173 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GPR87Q9BY21 358 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 WDR76Q9H967 626 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 DEPPQ9NTK1 212 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 CUTCQ9NTM9 273 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 FAM206AQ9NX38 181 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 GAR1Q9NY12 217 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 DHCR7Q9UBM7 475 aaKnown RBP2.04□□□□□ -2.08
VPS54-202ENST00000354504 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.04□□□□□ -2.08
VPS54-202ENST00000354504 PLCL2Q9UPR0 1127 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ERVK-19Q9WJR5 959 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 WDR45Q9Y484 360 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 MMACHCQ9Y4U1 282 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 NOX1Q9Y5S8 564 aa2.04□□□□□ -2.08
VPS54-202ENST00000354504 ANKRD11Q6UB99 2663 aaPredicted RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 PDZD2O15018 2839 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 A0A0B4J203 849 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 A0A1B0GVT2 93 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 C7orf66A4D0T2 115 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 OR6C76A6NM76 312 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PDZK1P1A8MUH7 402 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 CLDN25C9JDP6 229 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 AP4M1O00189 453 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 TRAF3IP2O43734 574 aaPredicted RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 AIREO43918 545 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PPP1R3DO95685 299 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 AK1P00568 194 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 RPLP0P05388 317 aaKnown RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 CYC1P08574 325 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 SLC35G6P0C7Q6 338 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 NHLRC4P0CG21 123 aaPredicted RBP2.03□□□□□ -2.08
VPS54-202ENST00000354504 PGA4P0DJD7 388 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 PGA3P0DJD8 388 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 GSTM3P21266 225 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 GABRA3P34903 492 aa2.03□□□□□ -2.08
VPS54-202ENST00000354504 EVI2BP34910 448 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms