RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 WFIKKN1Q96NZ8 548 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 TEAD3Q99594 435 aa19.4■□□□□ 0.7
SDC3-202ENST00000339394 H2AFY2Q9P0M6 372 aaPredicted RBP19.4■□□□□ 0.7
SDC3-202ENST00000339394 MPZL2O60487 215 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 GLCEO94923 617 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 HOXB1P14653 301 aaPredicted RBP19.39■□□□□ 0.69
SDC3-202ENST00000339394 MSR1P21757 451 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 HOXC12P31275 282 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 FMO3P31513 532 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 HSPA13P48723 471 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 ISL1P61371 349 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 RPS7P62081 194 aaKnown RBP19.39■□□□□ 0.69
SDC3-202ENST00000339394 IL5RAQ01344 420 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 IL18R1Q13478 541 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 TAB1Q15750 504 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 MEP1BQ16820 701 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 ZNF511Q8NB15 262 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 OR52N5Q8NH56 324 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 LINC01560Q8TB33 94 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 HSD17B8Q92506 261 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 EMC7Q9NPA0 242 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 MRPL22Q9NWU5 206 aaKnown RBP19.39■□□□□ 0.69
SDC3-202ENST00000339394 ZNF224Q9NZL3 707 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 DNAJC27Q9NZQ0 273 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 NDRG3Q9UGV2 375 aa19.39■□□□□ 0.69
SDC3-202ENST00000339394 A1L4Q6 167 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 ZNF503-AS2A6NEH8 195 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 TVP23AA6NH52 213 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 TUBAL3A6NHL2 446 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 PRSS44E7EML9 344 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 PPP3CBP16298 524 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 IGFBP2P18065 325 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 CAPZA2P47755 286 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 BLVRAP53004 296 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 UBE2NP61088 152 aaKnown RBP19.38■□□□□ 0.69
SDC3-202ENST00000339394 KCNMB1Q16558 191 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 SLC35D3Q5M8T2 416 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 SLC16A14Q7RTX9 510 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 ZSCAN2Q7Z7L9 614 aaPredicted RBP19.38■□□□□ 0.69
SDC3-202ENST00000339394 GID4Q8IVV7 300 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 SETD9Q8NE22 299 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 ZMYND19Q96E35 227 aaPredicted RBP19.38■□□□□ 0.69
SDC3-202ENST00000339394 ZNF582Q96NG8 517 aaPredicted RBP19.38■□□□□ 0.69
SDC3-202ENST00000339394 ZNF184Q99676 751 aaPredicted RBP19.38■□□□□ 0.69
SDC3-202ENST00000339394 MED18Q9BUE0 208 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 ZNF416Q9BWM5 594 aa19.38■□□□□ 0.69
SDC3-202ENST00000339394 SH3D21A4FU49 640 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 ENTPD6O75354 484 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 HLA-HP01893 362 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 HRGP04196 525 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 PATE4P0C8F1 98 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 LSM6P62312 80 aaKnown RBP19.37■□□□□ 0.69
SDC3-202ENST00000339394 TUBA1BP68363 451 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 TUBA4AP68366 448 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 TEKQ02763 1124 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 OCLNQ16625 522 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 MEDAGQ5VYS4 303 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 TUBA1AQ71U36 451 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 MEPCEQ7L2J0 689 aaKnown RBP19.37■□□□□ 0.69
SDC3-202ENST00000339394 CCDC36Q8IYA8 594 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 C8orf59Q8N0T1 100 aaPredicted RBP19.37■□□□□ 0.69
SDC3-202ENST00000339394 FGFBP3Q8TAT2 258 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 MUCL1Q96DR8 90 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 SLC25A15Q9Y619 301 aa19.37■□□□□ 0.69
SDC3-202ENST00000339394 ARPC4-TTLL3A0A0A6YYG9 625 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 CCDC182A6NF36 153 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 THBDP07204 575 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 PIGFQ07326 219 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 ENDOGQ14249 297 aaKnown RBP19.36■□□□□ 0.69
SDC3-202ENST00000339394 MAD2L1BPQ15013 274 aaPredicted RBP19.36■□□□□ 0.69
SDC3-202ENST00000339394 APH1BQ8WW43 257 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 FBXO17Q96EF6 278 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 ZC3HAV1LQ96H79 300 aaKnown RBP19.36■□□□□ 0.69
SDC3-202ENST00000339394 WDR76Q9H967 626 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 OBP2BQ9NPH6 170 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 B3GNT2Q9NY97 397 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 HSPE1-MOB4S4R3N1 261 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 CACNA1CQ13936 2221 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 SLC22A31A6NKX4 558 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 CST2P09228 141 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 CD79AP11912 226 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 GSTT1P30711 240 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 PEX19P40855 299 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 CDH11P55287 796 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 PPA1Q15181 289 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 ALKBH2Q6NS38 261 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 RFKQ969G6 155 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 KCNN2Q9H2S1 579 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 RAB26Q9ULW5 256 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 AMDHD2Q9Y303 409 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 COMMD3-BMI1R4GMX3 469 aa19.36■□□□□ 0.69
SDC3-202ENST00000339394 WBP4O75554 376 aaKnown RBP19.35■□□□□ 0.69
SDC3-202ENST00000339394 ZNF823P16415 610 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 HTR1FP30939 366 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 ADAM8P78325 824 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 SLC36A2Q495M3 483 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 DMRTC2Q8IXT2 367 aaPredicted RBP19.35■□□□□ 0.69
SDC3-202ENST00000339394 TIGD4Q8IY51 512 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 ACBD4Q8NC06 268 aa19.35■□□□□ 0.69
SDC3-202ENST00000339394 OR10H5Q8NGA6 315 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms