RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SERPINF1P36955 418 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 CDKN2AP42771 156 aaKnown RBP12.14□□□□□ -0.47
LIMS1-201ENST00000332345 ATP5J2P56134 94 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 ADAM8P78325 824 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 GALK2Q01415 458 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 HSF2Q03933 536 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 HGFACQ04756 655 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 DAG1Q14118 895 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 C1orf146Q5VVC0 180 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 VHLLQ6RSH7 139 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 CD300LDQ6UXZ3 194 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 FOXL2NBQ6ZUU3 175 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 SYT9Q86SS6 491 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 MYPOPQ86VE0 399 aaPredicted RBP12.14□□□□□ -0.47
LIMS1-201ENST00000332345 TGIF2LYQ8IUE0 185 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 GLB1L2Q8IW92 636 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 ALDH16A1Q8IZ83 802 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 OR10G2Q8NGC3 310 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 SNX18Q96RF0 628 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 FEVQ99581 238 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 SYT4Q9H2B2 425 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 RERGLQ9H628 205 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 EGLN3Q9H6Z9 239 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 TIMM10BQ9Y5J6 103 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 PMF1-BGLAPU3KQ54 211 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 ITPR3Q14573 2671 aa12.14□□□□□ -0.47
LIMS1-201ENST00000332345 DEAF1O75398 565 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-201ENST00000332345 MMP7P09237 267 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-201ENST00000332345 OR4A8P0C604 315 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 HIST1H1CP16403 213 aaKnown RBP12.13□□□□□ -0.47
LIMS1-201ENST00000332345 CTLA4P16410 223 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 APLNRP35414 380 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 ERFP50548 548 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 ETFDHQ16134 617 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 TBC1D28Q2M2D7 210 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 CLEC12AQ5QGZ9 265 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 LEG1Q6P5S2 330 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 PTCHD4Q6ZW05 846 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 ASRGL1Q7L266 308 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 ZNF584Q8IVC4 421 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 SLC30A7Q8NEW0 376 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 OR4K13Q8NH42 304 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 SLCO4A1Q96BD0 722 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 NUAK2Q9H093 628 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 ZNF442Q9H7R0 627 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 ZNF556Q9HAH1 456 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 SRA1Q9HD15 236 aaKnown RBP12.13□□□□□ -0.47
LIMS1-201ENST00000332345 POLE4Q9NR33 117 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 PDP1Q9P0J1 537 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-201ENST00000332345 FBXO9Q9UK97 447 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-201ENST00000332345 BAIAP2Q9UQB8 552 aa12.13□□□□□ -0.47
LIMS1-201ENST00000332345 B9A039 149 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 ZNF32P17041 273 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 THBS4P35443 961 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 CDKN1AP38936 164 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 RAB35Q15286 201 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 ADIPOQQ15848 244 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 PABPC1L2AQ5JQF8 200 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 Q5PR19 223 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 SLC35F1Q5T1Q4 408 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 C11orf71Q6IPW1 123 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 KRT80Q6KB66 452 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 YTHDF3Q7Z739 585 aaKnown RBP12.12□□□□□ -0.47
LIMS1-201ENST00000332345 LURAP1LQ8IV03 231 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 OR52E2Q8NGJ4 325 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 FBXO17Q96EF6 278 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 NRBF2Q96F24 287 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 NMNAT3Q96T66 252 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 ZNF416Q9BWM5 594 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 TSSK6Q9BXA6 273 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 CACNG6Q9BXT2 260 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 CDH20Q9HBT6 801 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 TBC1D23Q9NUY8 699 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 B9D1Q9UPM9 204 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 COA3Q9Y2R0 106 aaPredicted RBP12.12□□□□□ -0.47
LIMS1-201ENST00000332345 CMAHPQ9Y471 501 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 AP4S1Q9Y587 144 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 MED13LQ71F56 2210 aa12.12□□□□□ -0.47
LIMS1-201ENST00000332345 BHLHE40O14503 412 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 TIPRLO75663 272 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 ANXA8P13928 327 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 STOMP27105 288 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 APEX1P27695 318 aaKnown RBP12.11□□□□□ -0.47
LIMS1-201ENST00000332345 GLRXP35754 106 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 RAD52P43351 418 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 CENPAP49450 140 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 RPS23P62266 143 aaKnown RBP12.11□□□□□ -0.47
LIMS1-201ENST00000332345 LSM6P62312 80 aaKnown RBP12.11□□□□□ -0.47
LIMS1-201ENST00000332345 SNRPD2P62316 118 aaKnown RBP12.11□□□□□ -0.47
LIMS1-201ENST00000332345 PSG4Q00888 419 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIMS1-201ENST00000332345 SNTB2Q13425 540 aaKnown RBP12.11□□□□□ -0.47
LIMS1-201ENST00000332345 SWI5Q1ZZU3 235 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 MST1LQ2TV78 715 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 UNQ6126/PRO20091Q6UXV3 157 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 TMEM179BQ7Z7N9 219 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 LNX2Q8N448 690 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 OR2T33Q8NG76 320 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 NIPSNAP1Q9BPW8 284 aa12.11□□□□□ -0.47
LIMS1-201ENST00000332345 BDH2Q9BUT1 245 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms