RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SLC30A7Q8NEW0 376 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 SLC2A12Q8TD20 617 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 CD14P08571 375 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 OR4E1P0C645 316 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 P2RX1P51575 399 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 ACSM1Q08AH1 577 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 GLDNQ6ZMI3 551 aaPredicted RBP14.04□□□□□ -0.16
SHH-201ENST00000297261 SDF2Q99470 211 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 SLC19A3Q9BZV2 496 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 WIF1Q9Y5W5 379 aa14.04□□□□□ -0.16
SHH-201ENST00000297261 PPP1R2P9O14990 202 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 NSA2O95478 260 aaKnown RBP14.03□□□□□ -0.16
SHH-201ENST00000297261 GABRR1P24046 479 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 SNRPNP63162 240 aaKnown RBP14.03□□□□□ -0.16
SHH-201ENST00000297261 RAE1P78406 368 aaKnown RBP14.03□□□□□ -0.16
SHH-201ENST00000297261 RSU1Q15404 277 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 BAP18Q8IXM2 172 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 MFSD9Q8NBP5 474 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 ZG16BQ96DA0 208 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 SORCS2Q96PQ0 1159 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 LMF2Q9BU23 707 aaKnown RBP14.03□□□□□ -0.16
SHH-201ENST00000297261 EMC9Q9Y3B6 208 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 KCNE1BA0A087WTH5 132 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 LINC00862A6NCI5 91 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 OPN1LWP04000 364 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 CALCBP10092 127 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 NR2C1P13056 603 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 NID1P14543 1247 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 COL9A1P20849 921 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 GUCA2AQ02747 115 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 Q6ZS52 159 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 OR9A4Q8NGU2 314 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 SLC6A18Q96N87 628 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 KIR3DX1Q9H7L2 352 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 ICKQ9UPZ9 632 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 VDAC3Q9Y277 283 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 DOCK6Q96HP0 2047 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 SMCO3A2RU48 225 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 CTNSO60931 367 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 CDK5Q00535 292 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 TMEM64Q6YI46 380 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 HAS2Q92819 552 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 WDR76Q9H967 626 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 BCL2L10Q9HD36 194 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 KCNE3Q9Y6H6 103 aa14.03□□□□□ -0.16
SHH-201ENST00000297261 MCRIP1C9JLW8 97 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 CDK2AP1O14519 115 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 LANCL1O43813 399 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 IFNA1P01562 189 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 GLI4P10075 376 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 CD53P19397 219 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 PI3P19957 117 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 CSF2RBP32927 897 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 IRF3Q14653 427 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 FXNQ16595 210 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 TTC9Q92623 222 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 NXF5Q9H1B4 397 aaKnown RBP14.02□□□□□ -0.16
SHH-201ENST00000297261 H0YGG7 62 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 GLCEO94923 617 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 ZNF44P15621 663 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 NSDHLQ15738 373 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 LPCAT3Q6P1A2 487 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 BPIFCQ8NFQ6 507 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 NICN1Q9BSH3 213 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 CHRDQ9H2X0 955 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 PCDHB10Q9UN67 800 aa14.02□□□□□ -0.16
SHH-201ENST00000297261 TRIOBPQ9H2D6 2365 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 A0A087WZY1 265 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 K7EQS6 105 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 S100A8P05109 93 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 EPHA1P21709 976 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 PSMB6P28072 239 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 LSM11P83369 360 aaKnown RBP eCLIP14.02□□□□□ -0.17
SHH-201ENST00000297261 TMEM201Q5SNT2 666 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 WBP2NLQ6ICG8 309 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 DPY19L2P2Q6ZN68 376 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 C17orf47Q8NEP4 570 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 RAB3CQ96E17 227 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 SENP5Q96HI0 755 aaPredicted RBP14.02□□□□□ -0.17
SHH-201ENST00000297261 UFSP2Q9NUQ7 469 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 FBXO7Q9Y3I1 522 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 C17orf105B2RV13 164 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 LPLP06858 475 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 SERPINA2P20848 420 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 SERPINF1P36955 418 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 PRAMEF8Q5VWM4 474 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 PRAMEF7Q5VXH5 474 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 TMEM184AQ6ZMB5 413 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 MDGA2Q7Z553 956 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 DAZLQ92904 295 aaKnown RBP14.02□□□□□ -0.17
SHH-201ENST00000297261 NRTNQ99748 197 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 NXF2Q9GZY0 626 aaKnown RBP14.02□□□□□ -0.17
SHH-201ENST00000297261 SLCO5A1Q9H2Y9 848 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 SPACA1Q9HBV2 294 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.02□□□□□ -0.17
SHH-201ENST00000297261 IL20Q9NYY1 176 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 SLC17A4Q9Y2C5 497 aa14.02□□□□□ -0.17
SHH-201ENST00000297261 VSTM2BA6NLU5 285 aa14.01□□□□□ -0.17
SHH-201ENST00000297261 TACR3P29371 465 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms