RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 COX15Q7KZN9 410 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 CMIPQ8IY22 773 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 GTPBP8Q8N3Z3 284 aaPredicted RBP10.84□□□□□ -0.67
USHBP1-201ENST00000252597 ZNF417Q8TAU3 575 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 SLC2A12Q8TD20 617 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 CCDC107Q8WV48 283 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 RLN3Q8WXF3 142 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 MAFIPQ8WZ33 124 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 FGF14Q92915 247 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 PBX4Q9BYU1 374 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 REG4Q9BYZ8 158 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 WDR13Q9H1Z4 485 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 OR10A5Q9H207 317 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 MTFP1Q9UDX5 166 aa10.84□□□□□ -0.67
USHBP1-201ENST00000252597 CYR61O00622 381 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 KCNJ13O60928 360 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 RAG2P55895 527 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 KIR2DS3Q14952 304 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 TMEM196Q5HYL7 178 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 TMEM71Q6P5X7 295 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 OR5D18Q8NGL1 313 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 PNPLA2Q96AD5 504 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 ANKRD9Q96BM1 317 aaPredicted RBP10.83□□□□□ -0.68
USHBP1-201ENST00000252597 C5orf34Q96MH7 638 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 SMIM3Q9BZL3 60 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 NKX6-2Q9C056 277 aaPredicted RBP10.83□□□□□ -0.68
USHBP1-201ENST00000252597 SLC7A5P2Q9GIP4 190 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 PILRAQ9UKJ1 303 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 FAM96BQ9Y3D0 163 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 LRRK1Q38SD2 2015 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 CACNA1EQ15878 2313 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 A0A087WUJ7 227 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 P2RY10O00398 339 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 XRCC3O43542 346 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 PMP2P02689 132 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 HNRNPA1P09651 372 aaKnown RBP eCLIP10.83□□□□□ -0.68
USHBP1-201ENST00000252597 ITGA3P26006 1051 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 NR0B1P51843 470 aaKnown RBP10.83□□□□□ -0.68
USHBP1-201ENST00000252597 PRPS1P60891 318 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 HHEXQ03014 270 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 UBXN2BQ14CS0 331 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 C1orf189Q5VU69 101 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 GLT8D1Q68CQ7 371 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 SLC16A9Q7RTY1 509 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 ZNF764Q96H86 408 aaPredicted RBP10.83□□□□□ -0.68
USHBP1-201ENST00000252597 TMEM41AQ96HV5 264 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 TGM7Q96PF1 710 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 MBD2Q9UBB5 411 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 PNPP00491 289 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 COL9A1P20849 921 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 CEBPGP53567 150 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 ZP2Q05996 745 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 DHRS2Q13268 280 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 GUCA2BQ16661 112 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 OR5M9Q8NGP3 310 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 ROBO4Q8WZ75 1007 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 MRPS24Q96EL2 167 aaKnown RBP10.83□□□□□ -0.68
USHBP1-201ENST00000252597 SLC41A2Q96JW4 573 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 STACQ99469 402 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 EMC6Q9BV81 110 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 TBL1XR1Q9BZK7 514 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 SELENOIQ9C0D9 397 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 HAO2Q9NYQ3 351 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 DHCR7Q9UBM7 475 aaKnown RBP10.83□□□□□ -0.68
USHBP1-201ENST00000252597 UPB1Q9UBR1 384 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 PCDHB10Q9UN67 800 aa10.83□□□□□ -0.68
USHBP1-201ENST00000252597 TMEM200CA6NKL6 621 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 H3BML4 177 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 FBXO24O75426 580 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 SFTPBP07988 381 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 ZNF806P0C7X5 589 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 ZNF823P16415 610 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 SCRN3Q0VDG4 424 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 AIMP2Q13155 320 aaKnown RBP10.82□□□□□ -0.68
USHBP1-201ENST00000252597 NKAIN2Q5VXU1 208 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 MCATQ8IVS2 390 aaKnown RBP10.82□□□□□ -0.68
USHBP1-201ENST00000252597 TEX19Q8NA77 164 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 OR13H1Q8NG92 308 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 OR1J4Q8NGS1 313 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 GPER1Q99527 375 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 NPAS1Q99742 590 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 MAP3K3Q99759 626 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 NXF5Q9H1B4 397 aaKnown RBP10.82□□□□□ -0.68
USHBP1-201ENST00000252597 EPHA6Q9UF33 1036 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 VDAC3Q9Y277 283 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 MUC3AQ02505 3323 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 MED19A0JLT2 244 aaPredicted RBP10.82□□□□□ -0.68
USHBP1-201ENST00000252597 UPK3AO75631 287 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 NKX2-2O95096 273 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 RNH1P13489 461 aaKnown RBP10.82□□□□□ -0.68
USHBP1-201ENST00000252597 HTR2CP28335 458 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 IL12BP29460 328 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 TSFMP43897 325 aaKnown RBP10.82□□□□□ -0.68
USHBP1-201ENST00000252597 ARL4DP49703 201 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 FMODQ06828 376 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 MFGE8Q08431 387 aaPredicted RBP10.82□□□□□ -0.68
USHBP1-201ENST00000252597 EIF2B5Q13144 721 aaKnown RBP10.82□□□□□ -0.68
USHBP1-201ENST00000252597 MESTQ5EB52 335 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 LINC01590Q5TEZ4 76 aa10.82□□□□□ -0.68
USHBP1-201ENST00000252597 LCN10Q6JVE6 187 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms