RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 INSM1Q01101 510 aaPredicted RBP16.86■□□□□ 0.29
CPSF3-201ENST00000238112 ROM1Q03395 351 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 EIF2B1Q14232 305 aaKnown RBP16.86■□□□□ 0.29
CPSF3-201ENST00000238112 TOMM20Q15388 145 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 TSSK4Q6SA08 328 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 Q6ZS52 159 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 CLEC1AQ8NC01 280 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 OR1J4Q8NGS1 313 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 PPP1R14AQ96A00 147 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 NKX3-1Q99801 234 aaPredicted RBP16.86■□□□□ 0.29
CPSF3-201ENST00000238112 TXNIPQ9H3M7 391 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 SDHAF2Q9NX18 166 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 COQ3Q9NZJ6 369 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 VSX1Q9NZR4 365 aaPredicted RBP16.86■□□□□ 0.29
CPSF3-201ENST00000238112 SESN1Q9Y6P5 492 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 IGKV3D-11A0A0A0MRZ8 115 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 A0A1W2PQD3 144 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 B3GALNT1O75752 331 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 PPP3CBP16298 524 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 POLR2HP52434 150 aaKnown RBP16.86■□□□□ 0.29
CPSF3-201ENST00000238112 MFGE8Q08431 387 aaPredicted RBP16.86■□□□□ 0.29
CPSF3-201ENST00000238112 ALKAL2Q6UX46 152 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 C9orf40Q8IXQ3 194 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 GABRG1Q8N1C3 465 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 GALNT11Q8NCW6 608 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 COQ8AQ8NI60 647 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 GPX8Q8TED1 209 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 UPB1Q9UBR1 384 aa16.86■□□□□ 0.29
CPSF3-201ENST00000238112 TMED7-TICAM2A0A0A6YYA0 188 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 IGLV1-36A0A0B4J1U3 117 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 CTLA4P16410 223 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 HTR2CP28335 458 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 TAS2R19P59542 299 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 MPPED2Q15777 294 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 ETFDHQ16134 617 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 B3GNTL1Q67FW5 361 aaPredicted RBP16.85■□□□□ 0.29
CPSF3-201ENST00000238112 ASPHD2Q6ICH7 369 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 FAM166AQ6J272 317 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 ZNF627Q7L945 461 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 GLRX5Q86SX6 157 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 SCARB1Q8WTV0 552 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 CCDC107Q8WV48 283 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 ASB5Q8WWX0 329 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 RLN3Q8WXF3 142 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 C8orf44Q96CB5 159 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 TAS2R4Q9NYW5 299 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 TMED7Q9Y3B3 224 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 TSPAN2O60636 221 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 WISP1O95388 367 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 LPLP06858 475 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 POU3F2P20265 443 aaPredicted RBP16.85■□□□□ 0.29
CPSF3-201ENST00000238112 C1orf140Q5VVS0 124 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 DCAF12L2Q5VW00 463 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 SPERTQ8NA61 448 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 FAM174AQ8TBP5 190 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 ZDHHC12Q96GR4 267 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 ABHD6Q9BV23 337 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 POTEKPQ9BYX7 375 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 DHCR7Q9UBM7 475 aaKnown RBP16.85■□□□□ 0.29
CPSF3-201ENST00000238112 COPS7AQ9UBW8 275 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 LRP12Q9Y561 859 aa16.85■□□□□ 0.29
CPSF3-201ENST00000238112 CACNA1CQ13936 2221 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 SLC22A23A1A5C7 686 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 A8MVM7 634 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 SULT1C2O00338 296 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 NME1P15531 152 aaKnown RBP16.84■□□□□ 0.29
CPSF3-201ENST00000238112 GLYATL3Q5SZD4 288 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 GSG1LQ6UXU4 331 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 CATSPERDQ86XM0 798 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 DAZLQ92904 295 aaKnown RBP16.84■□□□□ 0.29
CPSF3-201ENST00000238112 RELTQ969Z4 430 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 GAL3ST1Q99999 423 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 POFUT1Q9H488 388 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 SPTBN5Q9NRC6 3674 aaKnown RBP16.84■□□□□ 0.29
CPSF3-201ENST00000238112 MFSD2BA6NFX1 497 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 DXOO77932 396 aaKnown RBP16.84■□□□□ 0.29
CPSF3-201ENST00000238112 RAB3DO95716 219 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 NMBP08949 121 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 ZP3P21754 424 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 MAP2K6P52564 334 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 GLO1Q04760 184 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 GK2Q14410 553 aaPredicted RBP16.84■□□□□ 0.29
CPSF3-201ENST00000238112 MELKQ14680 651 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 NSDHLQ15738 373 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 SLC29A4Q7RTT9 530 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 NAXDQ8IW45 347 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 SLC25A28Q96A46 364 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 WBP1Q96G27 269 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 SLC25A44Q96H78 314 aaPredicted RBP16.84■□□□□ 0.29
CPSF3-201ENST00000238112 CXorf58Q96LI9 332 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 WWTR1Q9GZV5 400 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 CHST6Q9GZX3 395 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 CHRNA10Q9GZZ6 450 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 TTYH1Q9H313 450 aaPredicted RBP16.84■□□□□ 0.29
CPSF3-201ENST00000238112 PFDN2Q9UHV9 154 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 ALPK2Q86TB3 2170 aa16.84■□□□□ 0.29
CPSF3-201ENST00000238112 USP34Q70CQ2 3546 aa16.83■□□□□ 0.28
CPSF3-201ENST00000238112 NPIPB7O75200 414 aa16.83■□□□□ 0.28
CPSF3-201ENST00000238112 GABRA1P14867 456 aa16.83■□□□□ 0.28
CPSF3-201ENST00000238112 DNASE1L1P49184 302 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms