RNA–Protein interactions for RNA: ENST00000639702.1

RBM39-245, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 5,914 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-245	ENST00000639702	SYCP2	Q9BX26	1530 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	POLR3A	O14802	1390 aa	Predicted RBP	13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	DZIP3	Q86Y13	1208 aa	Known RBP	13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	TBC1D32	Q96NH3	1257 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	PARP3	Q9Y6F1	533 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	CALML3	P27482	149 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	MACROD2	A1Z1Q3	448 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	PDE1A	P54750	535 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	BRF1	Q92994	677 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	PCDH11X	Q9BZA7	1347 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	PCDH11Y	Q9BZA8	1340 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	ACTN2	P35609	894 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	SMARCC2	Q8TAQ2	1214 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	TSNARE1	Q96NA8	513 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	NAP1L4	Q99733	375 aa	Known RBP	13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	ESYT1	Q9BSJ8	1104 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	PAG1	Q9NWQ8	432 aa		13.98	□□□□□ -0.17
RBM39-245	ENST00000639702	SDS	P20132	328 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	PRPH	P41219	470 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	NOP2	P46087	812 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	ZNF165	P49910	485 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	EIF4A2	Q14240	407 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	RRAGB	Q5VZM2	374 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	LMBR1L	Q6UX01	489 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	HEATR3	Q7Z4Q2	680 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	RTCB	Q9Y3I0	505 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	RBM8A	Q9Y5S9	174 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	UBAP1L	F5GYI3	381 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	BIN1	O00499	593 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	USP25	Q9UHP3	1055 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	ABCC10	Q5T3U5	1492 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	LINS1	Q8NG48	757 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	RRP36	Q96EU6	259 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	ATP10B	O94823	1461 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	PABPN1L	A6NDY0	278 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	CKAP4	Q07065	602 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	BBX	Q8WY36	941 aa	Predicted RBP	13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	ACSBG1	Q96GR2	724 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	DCAF5	Q96JK2	942 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	PUF60	Q9UHX1	559 aa	Known RBP	13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	POLD1	P28340	1107 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	NAPA	P54920	295 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	MEIS3	Q99687	375 aa		13.97	□□□□□ -0.17
RBM39-245	ENST00000639702	NPAT	Q14207	1427 aa		13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	PRAG1	Q86YV5	1406 aa		13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	N4BP3	O15049	544 aa		13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	RNF113A	O15541	343 aa	Known RBP	13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	CYLC1	P35663	651 aa	Predicted RBP	13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	SIRT1	Q96EB6	747 aa		13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	TMX3	Q96JJ7	454 aa		13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	FAM107B	Q9H098	131 aa		13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	SLC9C2	Q5TAH2	1124 aa		13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	SNW1	Q13573	536 aa	Known RBP	13.96	□□□□□ -0.17
RBM39-245	ENST00000639702	FSD2	A1L4K1	749 aa		13.96	□□□□□ -0.18
RBM39-245	ENST00000639702	ADCY5	O95622	1261 aa		13.96	□□□□□ -0.18
RBM39-245	ENST00000639702	KLHL40	Q2TBA0	621 aa		13.96	□□□□□ -0.18
RBM39-245	ENST00000639702	LARP6	Q9BRS8	491 aa	Known RBP	13.96	□□□□□ -0.18
RBM39-245	ENST00000639702	C19orf44	Q9H6X5	657 aa		13.96	□□□□□ -0.18
RBM39-245	ENST00000639702	RAD50	Q92878	1312 aa		13.95	□□□□□ -0.18
RBM39-245	ENST00000639702	HLTF	Q14527	1009 aa	Known RBP eCLIP	13.95	□□□□□ -0.18	6e-21	■□□□□ 9.2
RBM39-245	ENST00000639702	MRPS27	Q92552	414 aa	Known RBP	13.95	□□□□□ -0.18
RBM39-245	ENST00000639702	CCDC171	Q6TFL3	1326 aa		13.95	□□□□□ -0.18
RBM39-245	ENST00000639702	JARID2	Q92833	1246 aa	Predicted RBP	13.95	□□□□□ -0.18
RBM39-245	ENST00000639702	RBM17	Q96I25	401 aa	Known RBP	13.95	□□□□□ -0.18
RBM39-245	ENST00000639702		Q6ZUG5	572 aa		13.95	□□□□□ -0.18
RBM39-245	ENST00000639702	ANXA1	P04083	346 aa		13.95	□□□□□ -0.18
RBM39-245	ENST00000639702	RBM28	Q9NW13	759 aa	Known RBP	13.95	□□□□□ -0.18
RBM39-245	ENST00000639702	PSMA7	O14818	248 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	IGHD	P01880	384 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	DNA2	P51530	1060 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	NCBP1	Q09161	790 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	SLC4A8	Q2Y0W8	1093 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	SPECC1	Q5M775	1068 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	NBPF14	Q5TI25	921 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	RRP9	O43818	475 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	KRT2	P35908	639 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	PRPF4B	Q13523	1007 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	COMMD10	Q9Y6G5	202 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	KIF4A	O95239	1232 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	PICALM	Q13492	652 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	PANK2	Q9BZ23	570 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	PAXBP1	Q9Y5B6	917 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	SLC39A6	Q13433	755 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	CTTNBP2	Q8WZ74	1663 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	SYNC	Q9H7C4	482 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	SPDYE3	A6NKU9	549 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	IRS4	O14654	1257 aa	Predicted RBP	13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	PHACTR2	O75167	634 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	TSHZ3	Q63HK5	1081 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	SREK1	Q8WXA9	508 aa	Known RBP	13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	C8orf37	Q96NL8	207 aa		13.94	□□□□□ -0.18
RBM39-245	ENST00000639702	LMAN1	P49257	510 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	KIAA0753	Q2KHM9	967 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	RAB11FIP4	Q86YS3	637 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	SELENOO	Q9BVL4	669 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	IMPG2	Q9BZV3	1241 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	PPM1F	P49593	454 aa	Predicted RBP	13.93	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms