RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 KRT28Q7Z3Y7 464 aa23.71■■□□□ 1.39
SYNGAP1-227ENST00000638142 JARID2Q92833 1246 aaPredicted RBP23.71■■□□□ 1.39
SYNGAP1-227ENST00000638142 ARID3AQ99856 593 aa23.71■■□□□ 1.39
SYNGAP1-227ENST00000638142 DBNDD2Q9BQY9 259 aa23.71■■□□□ 1.39
SYNGAP1-227ENST00000638142 TATP17735 454 aaPredicted RBP23.7■■□□□ 1.38
SYNGAP1-227ENST00000638142 ZNF165P49910 485 aa23.7■■□□□ 1.38
SYNGAP1-227ENST00000638142 CCDC129Q6ZRS4 1044 aa23.7■■□□□ 1.38
SYNGAP1-227ENST00000638142 TSC1Q92574 1164 aa23.7■■□□□ 1.38
SYNGAP1-227ENST00000638142 AFDNP55196 1824 aaKnown RBP23.7■■□□□ 1.38
SYNGAP1-227ENST00000638142 TRIM5Q9C035 493 aa23.7■■□□□ 1.38
SYNGAP1-227ENST00000638142 KDM4FA0A1W2PPD8 638 aa23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 PFKFB2O60825 505 aa23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 CCDC186Q7Z3E2 898 aa23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 TICAM2Q86XR7 235 aa23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 KBTBD3Q8NAB2 608 aa23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 SCRN1Q12765 414 aa23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 NAA16Q6N069 864 aaPredicted RBP23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 TTC5Q8N0Z6 440 aa23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 SEC62Q99442 399 aaKnown RBP23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 USP16Q9Y5T5 823 aa23.69■■□□□ 1.38
SYNGAP1-227ENST00000638142 ABCC6O95255 1503 aa23.68■■□□□ 1.38
SYNGAP1-227ENST00000638142 DRC7Q8IY82 874 aa23.68■■□□□ 1.38
SYNGAP1-227ENST00000638142 IFNL2Q8IZJ0 200 aa23.68■■□□□ 1.38
SYNGAP1-227ENST00000638142 NDUFB9Q9Y6M9 179 aa23.68■■□□□ 1.38
SYNGAP1-227ENST00000638142 PALLDQ8WX93 1383 aa23.68■■□□□ 1.38
SYNGAP1-227ENST00000638142 KIF1AQ12756 1690 aa23.68■■□□□ 1.38
SYNGAP1-227ENST00000638142 FGD1P98174 961 aa23.68■■□□□ 1.38
SYNGAP1-227ENST00000638142 DNAJC25Q9H1X3 360 aa23.68■■□□□ 1.38
SYNGAP1-227ENST00000638142 BCL2L12Q9HB09 334 aa23.68■■□□□ 1.38
SYNGAP1-227ENST00000638142 PLEKHG2Q9H7P9 1386 aa23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 DDX46Q7L014 1031 aaKnown RBP23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 DHX32Q7L7V1 743 aaKnown RBP23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 DDX11Q96FC9 970 aa23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 NLRP2Q9NX02 1062 aa23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 ARFGEF2Q9Y6D5 1785 aa23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 A0A087WZG4 1122 aa23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 RIOK3O14730 519 aaKnown RBP23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 CTAGE5O15320 804 aa23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 FMNL2Q96PY5 1086 aa23.67■■□□□ 1.38
SYNGAP1-227ENST00000638142 CDC25BP30305 580 aa23.66■■□□□ 1.38
SYNGAP1-227ENST00000638142 CASP7P55210 303 aa23.66■■□□□ 1.38
SYNGAP1-227ENST00000638142 UTP14CQ5TAP6 766 aaKnown RBP23.66■■□□□ 1.38
SYNGAP1-227ENST00000638142 STOX1Q6ZVD7 989 aa23.66■■□□□ 1.38
SYNGAP1-227ENST00000638142 NSUN7Q8NE18 718 aaKnown RBP23.66■■□□□ 1.38
SYNGAP1-227ENST00000638142 DSCC1Q9BVC3 393 aa23.66■■□□□ 1.38
SYNGAP1-227ENST00000638142 HELLSQ9NRZ9 838 aa23.66■■□□□ 1.38
SYNGAP1-227ENST00000638142 CHGBP05060 677 aa23.65■■□□□ 1.38
SYNGAP1-227ENST00000638142 ZC3H6P61129 1189 aaKnown RBP23.65■■□□□ 1.38
SYNGAP1-227ENST00000638142 ATL3Q6DD88 541 aa23.65■■□□□ 1.38
SYNGAP1-227ENST00000638142 ZSCAN25Q6NSZ9 544 aa23.65■■□□□ 1.38
SYNGAP1-227ENST00000638142 AEBP2Q6ZN18 517 aaPredicted RBP23.65■■□□□ 1.38
SYNGAP1-227ENST00000638142 DCAF5Q96JK2 942 aa23.65■■□□□ 1.38
SYNGAP1-227ENST00000638142 RCOR1Q9UKL0 485 aa23.65■■□□□ 1.38
SYNGAP1-227ENST00000638142 MEGF6O75095 1541 aa23.65■■□□□ 1.38
SYNGAP1-227ENST00000638142 ADD1P35611 737 aaKnown RBP23.65■■□□□ 1.38
SYNGAP1-227ENST00000638142 CTIFO43310 598 aaKnown RBP23.64■■□□□ 1.37
SYNGAP1-227ENST00000638142 PLBD2Q8NHP8 589 aa23.64■■□□□ 1.37
SYNGAP1-227ENST00000638142 AGXT2Q9BYV1 514 aa23.64■■□□□ 1.37
SYNGAP1-227ENST00000638142 MYH15Q9Y2K3 1946 aa23.64■■□□□ 1.37
SYNGAP1-227ENST00000638142 SARM1Q6SZW1 724 aa23.64■■□□□ 1.37
SYNGAP1-227ENST00000638142 LRRC2Q9BYS8 371 aa23.64■■□□□ 1.37
SYNGAP1-227ENST00000638142 GPR108Q9NPR9 543 aa23.63■■□□□ 1.37
SYNGAP1-227ENST00000638142 CLIP2Q9UDT6 1046 aa23.63■■□□□ 1.37
SYNGAP1-227ENST00000638142 ALS2Q96Q42 1657 aa23.63■■□□□ 1.37
SYNGAP1-227ENST00000638142 ATP5J2-PTCD1G3V325 749 aa23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 PTCD1O75127 700 aaKnown RBP23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 DMTNQ08495 405 aa23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 LRMPQ12912 555 aa23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 LMBR1LQ6UX01 489 aa23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 NRBP1Q9UHY1 535 aa23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 LAMA4Q16363 1823 aa23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 PTPDC1A2A3K4 754 aa23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 PIP4K2AP48426 406 aaPredicted RBP23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 PAG1Q9NWQ8 432 aa23.62■■□□□ 1.37
SYNGAP1-227ENST00000638142 GOLGA6L19H0YKK7 550 aa23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 EXOSC10Q01780 885 aaKnown RBP23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 IQCB1Q15051 598 aa23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 STX1AQ16623 288 aa23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 CHMP4CQ96CF2 233 aa23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 C1orf167Q5SNV9 1468 aa23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 CTDNEP1O95476 244 aa23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 ZSCAN20P17040 1043 aaPredicted RBP23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 CCAR1Q8IX12 1150 aaKnown RBP23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 ZNF396Q96N95 335 aaPredicted RBP23.61■■□□□ 1.37
SYNGAP1-227ENST00000638142 PPP4R3BQ5MIZ7 849 aa23.6■■□□□ 1.37
SYNGAP1-227ENST00000638142 ANKRD7Q92527 254 aa23.6■■□□□ 1.37
SYNGAP1-227ENST00000638142 FAM177BA6PVY3 158 aa23.6■■□□□ 1.37
SYNGAP1-227ENST00000638142 ZMYM1Q5SVZ6 1142 aa23.6■■□□□ 1.37
SYNGAP1-227ENST00000638142 CCDC73Q6ZRK6 1079 aa23.6■■□□□ 1.37
SYNGAP1-227ENST00000638142 PRDM10Q9NQV6 1147 aa23.6■■□□□ 1.37
SYNGAP1-227ENST00000638142 SALL1Q9NSC2 1324 aa23.6■■□□□ 1.37
SYNGAP1-227ENST00000638142 GOLIM4O00461 696 aa23.59■■□□□ 1.37
SYNGAP1-227ENST00000638142 FOXO4P98177 505 aa23.59■■□□□ 1.37
SYNGAP1-227ENST00000638142 CEBPZQ03701 1054 aaKnown RBP23.59■■□□□ 1.37
SYNGAP1-227ENST00000638142 APOBRQ0VD83 1088 aa23.59■■□□□ 1.37
SYNGAP1-227ENST00000638142 MRFAP1L1Q96HT8 127 aa23.59■■□□□ 1.37
SYNGAP1-227ENST00000638142 LAMB4A4D0S4 1761 aa23.59■■□□□ 1.37
SYNGAP1-227ENST00000638142 H7C1W4 665 aa23.59■■□□□ 1.37
SYNGAP1-227ENST00000638142 ATG9AQ7Z3C6 839 aa23.59■■□□□ 1.37
SYNGAP1-227ENST00000638142 PDCL2Q8N4E4 241 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms