RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 CACTIN-AS1Q8N1I8 211 aa7.15□□□□□ -1.26
SCN1A-211ENST00000635893 SAP130Q9H0E3 1048 aa7.15□□□□□ -1.26
SCN1A-211ENST00000635893 AKTIPQ9H8T0 292 aa7.15□□□□□ -1.26
SCN1A-211ENST00000635893 ZMIZ1Q9ULJ6 1067 aa7.15□□□□□ -1.26
SCN1A-211ENST00000635893 TRIP4Q15650 581 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-211ENST00000635893 PRR23CQ6ZRP0 262 aa7.14□□□□□ -1.27
SCN1A-211ENST00000635893 DZIP1LQ8IYY4 767 aaKnown RBP7.14□□□□□ -1.27
SCN1A-211ENST00000635893 PIK3R5Q8WYR1 880 aa7.14□□□□□ -1.27
SCN1A-211ENST00000635893 FAM13BQ9NYF5 915 aa7.14□□□□□ -1.27
SCN1A-211ENST00000635893 SETDB1Q15047 1291 aa7.13□□□□□ -1.27
SCN1A-211ENST00000635893 MUC3BQ9H195 1237 aa7.13□□□□□ -1.27
SCN1A-211ENST00000635893 RNF112Q9ULX5 631 aa7.13□□□□□ -1.27
SCN1A-211ENST00000635893 UBAP1LF5GYI3 381 aa7.12□□□□□ -1.27
SCN1A-211ENST00000635893 F8W735 103 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-211ENST00000635893 ALX3O95076 343 aa7.12□□□□□ -1.27
SCN1A-211ENST00000635893 SLC51AQ86UW1 340 aa7.12□□□□□ -1.27
SCN1A-211ENST00000635893 OR13H1Q8NG92 308 aa7.12□□□□□ -1.27
SCN1A-211ENST00000635893 STK32AQ8WU08 396 aa7.12□□□□□ -1.27
SCN1A-211ENST00000635893 CXXC1Q9P0U4 656 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-211ENST00000635893 TRIM33Q9UPN9 1127 aa7.12□□□□□ -1.27
SCN1A-211ENST00000635893 TNFRSF10BO14763 440 aa7.11□□□□□ -1.27
SCN1A-211ENST00000635893 PTCD1O75127 700 aaKnown RBP7.11□□□□□ -1.27
SCN1A-211ENST00000635893 FAM26DQ5JW98 314 aa7.11□□□□□ -1.27
SCN1A-211ENST00000635893 KRTAP9-2Q9BYQ4 174 aa7.11□□□□□ -1.27
SCN1A-211ENST00000635893 FNDC3AQ9Y2H6 1198 aaKnown RBP7.11□□□□□ -1.27
SCN1A-211ENST00000635893 PPME1Q9Y570 386 aa7.11□□□□□ -1.27
SCN1A-211ENST00000635893 ATG7O95352 703 aa7.1□□□□□ -1.27
SCN1A-211ENST00000635893 ZAP70P43403 619 aa7.1□□□□□ -1.27
SCN1A-211ENST00000635893 SRPK2P78362 688 aaKnown RBP7.1□□□□□ -1.27
SCN1A-211ENST00000635893 HYAL2Q12891 473 aa7.1□□□□□ -1.27
SCN1A-211ENST00000635893 Q6ZS46 218 aa7.1□□□□□ -1.27
SCN1A-211ENST00000635893 SPACA7Q96KW9 195 aa7.1□□□□□ -1.27
SCN1A-211ENST00000635893 MKNK1Q9BUB5 465 aa7.1□□□□□ -1.27
SCN1A-211ENST00000635893 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-211ENST00000635893 NAA30Q147X3 362 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-211ENST00000635893 CAPN12Q6ZSI9 719 aa7.09□□□□□ -1.27
SCN1A-211ENST00000635893 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-211ENST00000635893 SMNDC1O75940 238 aaKnown RBP eCLIP7.08□□□□□ -1.28
SCN1A-211ENST00000635893 FSTP19883 344 aa7.08□□□□□ -1.28
SCN1A-211ENST00000635893 COL13A1Q5TAT6 717 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-211ENST00000635893 TTC39BQ5VTQ0 682 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-211ENST00000635893 STIM2Q9P246 746 aa7.08□□□□□ -1.28
SCN1A-211ENST00000635893 GLB1P16278 677 aa7.07□□□□□ -1.28
SCN1A-211ENST00000635893 SCNN1AP37088 669 aa7.07□□□□□ -1.28
SCN1A-211ENST00000635893 TMEM164Q5U3C3 297 aa7.07□□□□□ -1.28
SCN1A-211ENST00000635893 CEP135Q66GS9 1140 aa7.07□□□□□ -1.28
SCN1A-211ENST00000635893 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.07□□□□□ -1.28
SCN1A-211ENST00000635893 AGGF1Q8N302 714 aaeCLIP7.07□□□□□ -1.28
SCN1A-211ENST00000635893 ABTB2Q8N961 1025 aa7.07□□□□□ -1.28
SCN1A-211ENST00000635893 GPR152Q8TDT2 470 aa7.07□□□□□ -1.28
SCN1A-211ENST00000635893 CLP1Q92989 425 aaKnown RBP7.07□□□□□ -1.28
SCN1A-211ENST00000635893 KRTAP9-6A0A140TA67 174 aa7.06□□□□□ -1.28
SCN1A-211ENST00000635893 LINC01387J3KSC0 135 aa7.06□□□□□ -1.28
SCN1A-211ENST00000635893 KIF4AO95239 1232 aa7.06□□□□□ -1.28
SCN1A-211ENST00000635893 CDC27P30260 824 aa7.06□□□□□ -1.28
SCN1A-211ENST00000635893 CD68P34810 354 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-211ENST00000635893 ATP11AP98196 1134 aa7.06□□□□□ -1.28
SCN1A-211ENST00000635893 GALNT11Q8NCW6 608 aa7.06□□□□□ -1.28
SCN1A-211ENST00000635893 LACRTQ9GZZ8 138 aa7.06□□□□□ -1.28
SCN1A-211ENST00000635893 ABI2Q9NYB9 513 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-211ENST00000635893 ZBTB39O15060 712 aa7.05□□□□□ -1.28
SCN1A-211ENST00000635893 RASSF4Q9H2L5 321 aa7.05□□□□□ -1.28
SCN1A-211ENST00000635893 PCMTD2Q9NV79 361 aa7.05□□□□□ -1.28
SCN1A-211ENST00000635893 RAXQ9Y2V3 346 aa7.05□□□□□ -1.28
SCN1A-211ENST00000635893 GSC2O15499 205 aa7.04□□□□□ -1.28
SCN1A-211ENST00000635893 PDE12Q6L8Q7 609 aaKnown RBP7.04□□□□□ -1.28
SCN1A-211ENST00000635893 UBL7Q96S82 380 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-211ENST00000635893 PBX4Q9BYU1 374 aa7.04□□□□□ -1.28
SCN1A-211ENST00000635893 CEP41Q9BYV8 373 aa7.04□□□□□ -1.28
SCN1A-211ENST00000635893 FAM117BQ6P1L5 589 aa7.03□□□□□ -1.28
SCN1A-211ENST00000635893 TXNDC11Q6PKC3 985 aa7.03□□□□□ -1.28
SCN1A-211ENST00000635893 NCAPG2Q86XI2 1143 aa7.03□□□□□ -1.28
SCN1A-211ENST00000635893 CEP120Q8N960 986 aa7.03□□□□□ -1.28
SCN1A-211ENST00000635893 KLHL23Q8NBE8 558 aa7.03□□□□□ -1.28
SCN1A-211ENST00000635893 STOML1Q9UBI4 398 aa7.03□□□□□ -1.28
SCN1A-211ENST00000635893 FAM177BA6PVY3 158 aa7.02□□□□□ -1.29
SCN1A-211ENST00000635893 TM4SF5O14894 197 aa7.02□□□□□ -1.29
SCN1A-211ENST00000635893 FSCN2O14926 492 aa7.02□□□□□ -1.29
SCN1A-211ENST00000635893 DHX15O43143 795 aaKnown RBP7.02□□□□□ -1.29
SCN1A-211ENST00000635893 WISP1O95388 367 aa7.02□□□□□ -1.29
SCN1A-211ENST00000635893 CYP2E1P05181 493 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-211ENST00000635893 PTPRAP18433 802 aa7.02□□□□□ -1.29
SCN1A-211ENST00000635893 ACAD11Q709F0 780 aa7.02□□□□□ -1.29
SCN1A-211ENST00000635893 PBXIP1Q96AQ6 731 aa7.02□□□□□ -1.29
SCN1A-211ENST00000635893 ELP3Q9H9T3 547 aa7.02□□□□□ -1.29
SCN1A-211ENST00000635893 KCNK4Q9NYG8 393 aa7.02□□□□□ -1.29
SCN1A-211ENST00000635893 IGLV1-40P01703 118 aa7.01□□□□□ -1.29
SCN1A-211ENST00000635893 RPLP1P05386 114 aaKnown RBP7.01□□□□□ -1.29
SCN1A-211ENST00000635893 ATP2B4P23634 1241 aa7.01□□□□□ -1.29
SCN1A-211ENST00000635893 CDC25BP30305 580 aa7.01□□□□□ -1.29
SCN1A-211ENST00000635893 SSTR4P31391 388 aa7.01□□□□□ -1.29
SCN1A-211ENST00000635893 UVSSAQ2YD98 709 aa7.01□□□□□ -1.29
SCN1A-211ENST00000635893 ADAMTSL4Q6UY14 1074 aa7.01□□□□□ -1.29
SCN1A-211ENST00000635893 NUDT16Q96DE0 195 aaKnown RBP7.01□□□□□ -1.29
SCN1A-211ENST00000635893 CARD10Q9BWT7 1032 aa7.01□□□□□ -1.29
SCN1A-211ENST00000635893 ADAM19Q9H013 955 aa7.01□□□□□ -1.29
SCN1A-211ENST00000635893 EPHA1P21709 976 aa7□□□□□ -1.29
SCN1A-211ENST00000635893 CD97P48960 835 aa7□□□□□ -1.29
SCN1A-211ENST00000635893 DUOXA2Q1HG44 320 aa7□□□□□ -1.29
SCN1A-211ENST00000635893 KIAA1211Q6ZU35 1233 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms