RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 CCDC65Q8IXS2 484 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 FSIP1Q8NA03 581 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 CSRNP2Q9H175 543 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 SH2D4AQ9H788 454 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 CNNM2Q9H8M5 875 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 CD2APQ9Y5K6 639 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 IVNS1ABPQ9Y6Y0 642 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 DAPK1P53355 1430 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 MX1P20591 662 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 ERCC5P28715 1186 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-209ENST00000635750 MPNDQ8N594 471 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 HOOK2Q96ED9 719 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 BACH1O14867 736 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 AKR1B10O60218 316 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 WTAPQ15007 396 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 EVI5LQ96CN4 794 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 SLC26A6Q9BXS9 759 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 CCT2P78371 535 aaKnown RBP6.29□□□□□ -1.4
SCN1A-209ENST00000635750 CFAP70Q5T0N1 1121 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 HS2ST1Q7LGA3 356 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 RAB11FIP4Q86YS3 637 aa6.29□□□□□ -1.4
SCN1A-209ENST00000635750 POLA1P09884 1462 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-209ENST00000635750 CCT6AP40227 531 aaKnown RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 PICALMQ13492 652 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 PLCB4Q15147 1175 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 WDR44Q5JSH3 913 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 RBM26Q5T8P6 1007 aaKnown RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 CALCOCO1Q9P1Z2 691 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 F8W031 263 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 INF2Q27J81 1249 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 CCDC102BQ68D86 513 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 SPC25Q9HBM1 224 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 STIM2Q9P246 746 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 FEZ2Q9UHY8 353 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 SUPT6HQ7KZ85 1726 aaKnown RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 MSL1Q68DK7 614 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 RRP36Q96EU6 259 aaKnown RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 NLRP3Q96P20 1036 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 ZC3H12CQ9C0D7 883 aaKnown RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 FRMD4BQ9Y2L6 1034 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 ATP6V0A2Q9Y487 856 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 AFG3L2Q9Y4W6 797 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 ESR2Q92731 530 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 EYA3Q99504 573 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 TMX1Q9H3N1 280 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 NAPAP54920 295 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 RBM27Q9P2N5 1060 aaKnown RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 ANKFY1Q9P2R3 1169 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 ERBINQ96RT1 1412 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 N4BP3O15049 544 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 MCM5P33992 734 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 CCDC129Q6ZRS4 1044 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 NUDT16Q96DE0 195 aaKnown RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 DBF4Q9UBU7 674 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 SYCE3A1L190 88 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 NR1I2O75469 434 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 ITIH3Q06033 890 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 PPP1R7Q15435 360 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 ZNF569Q5MCW4 686 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 TMC6Q7Z403 805 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 MICU3Q86XE3 530 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 PPFIBP2Q8ND30 876 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 PSPC1Q8WXF1 523 aaKnown RBP6.28□□□□□ -1.4
SCN1A-209ENST00000635750 FAM204AQ9H8W3 233 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 USP16Q9Y5T5 823 aa6.28□□□□□ -1.4
SCN1A-209ENST00000635750 NOP56O00567 594 aaKnown RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 SMTNP53814 917 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 KIF22Q14807 665 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 FNBP1Q96RU3 617 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 DDX19AQ9NUU7 478 aaKnown RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 CCDC61Q9Y6R9 512 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 WDR46O15213 610 aaKnown RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 TACC1O75410 805 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 RIOK1Q9BRS2 568 aaKnown RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 EXOC6BQ9Y2D4 811 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 ATP5DP30049 168 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 ATP6V1AP38606 617 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 TCIRG1Q13488 830 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 UTP14CQ5TAP6 766 aaKnown RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 GPR161Q8N6U8 529 aaKnown RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 GTF3C6Q969F1 213 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 MTUS1Q9ULD2 1270 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 HFM1A2PYH4 1435 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 BICDL2A1A5D9 508 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 PSMA7O14818 248 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 CIB2O75838 187 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 SLC5A4Q9NY91 659 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 KRT5P13647 590 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 KIF11P52732 1056 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 FERMT3Q86UX7 667 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 CCDC94Q9BW85 323 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 MTRF1LQ9UGC7 380 aaKnown RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 ZBTB21Q9ULJ3 1066 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 GJA3Q9Y6H8 435 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 CLUL1Q15846 466 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 NUF2Q9BZD4 464 aa6.27□□□□□ -1.41
SCN1A-209ENST00000635750 PPANQ9NQ55 473 aaKnown RBP6.27□□□□□ -1.41
SCN1A-209ENST00000635750 HMG20BQ9P0W2 317 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms