RNA–Protein interactions for RNA: ENST00000631057.2

GPC3-204, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 1,581 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-204ENST00000631057 NECAB1Q8N987 351 aa9.59□□□□□ -0.87
GPC3-204ENST00000631057 ZKSCAN5Q9Y2L8 839 aa9.59□□□□□ -0.87
GPC3-204ENST00000631057 ABCA3Q99758 1704 aa9.59□□□□□ -0.87
GPC3-204ENST00000631057 PALLDQ8WX93 1383 aa9.59□□□□□ -0.87
GPC3-204ENST00000631057 H7C1W4 665 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 TPM2P07951 284 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 PIP4K2AP48426 406 aaPredicted RBP9.58□□□□□ -0.88
GPC3-204ENST00000631057 KRT85P78386 507 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 DNM1Q05193 864 aaKnown RBP9.58□□□□□ -0.88
GPC3-204ENST00000631057 ZCRB1Q8TBF4 217 aaKnown RBP9.58□□□□□ -0.88
GPC3-204ENST00000631057 DDX54Q8TDD1 881 aaKnown RBP9.58□□□□□ -0.88
GPC3-204ENST00000631057 GPR108Q9NPR9 543 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 CWC25Q9NXE8 425 aaPredicted RBP9.58□□□□□ -0.88
GPC3-204ENST00000631057 KCPQ6ZWJ8 1503 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 ZNF609O15014 1411 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 ELP1O95163 1332 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 WDR17Q8IZU2 1322 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 SH3TC1Q8TE82 1336 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 PTMAP06454 111 aaKnown RBP9.58□□□□□ -0.88
GPC3-204ENST00000631057 TOB2Q14106 344 aaPredicted RBP9.58□□□□□ -0.88
GPC3-204ENST00000631057 MCMDC2Q4G0Z9 681 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 LMBR1LQ6UX01 489 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 JARID2Q92833 1246 aaPredicted RBP9.58□□□□□ -0.88
GPC3-204ENST00000631057 DNAJC2Q99543 621 aaKnown RBP9.58□□□□□ -0.88
GPC3-204ENST00000631057 DBNDD2Q9BQY9 259 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 SLC24A3Q9HC58 644 aa9.58□□□□□ -0.88
GPC3-204ENST00000631057 NBPF26B4DH59 902 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 HMGB1P09429 215 aaKnown RBP9.57□□□□□ -0.88
GPC3-204ENST00000631057 IL15P40933 162 aaPredicted RBP9.57□□□□□ -0.88
GPC3-204ENST00000631057 TERF1P54274 439 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 FOXO4P98177 505 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 NBPF14Q5TI25 921 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 NBPF10Q6P3W6 841 aaKnown RBP9.57□□□□□ -0.88
GPC3-204ENST00000631057 NBPF15Q8N660 670 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 KBTBD3Q8NAB2 608 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 EDC3Q96F86 508 aaKnown RBP9.57□□□□□ -0.88
GPC3-204ENST00000631057 NEK1Q96PY6 1258 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 PRDM11Q9NQV5 511 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 CHMP3Q9Y3E7 222 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 MYH3P11055 1940 aa9.57□□□□□ -0.88
GPC3-204ENST00000631057 TNS2Q63HR2 1409 aa9.56□□□□□ -0.88
GPC3-204ENST00000631057 TOM1L2Q6ZVM7 507 aa9.56□□□□□ -0.88
GPC3-204ENST00000631057 BRINP3Q76B58 766 aa9.56□□□□□ -0.88
GPC3-204ENST00000631057 CCDC191Q8NCU4 936 aa9.56□□□□□ -0.88
GPC3-204ENST00000631057 GTF3C6Q969F1 213 aa9.56□□□□□ -0.88
GPC3-204ENST00000631057 SCAND2PQ9GZW5 306 aaPredicted RBP9.56□□□□□ -0.88
GPC3-204ENST00000631057 HELLSQ9NRZ9 838 aa9.56□□□□□ -0.88
GPC3-204ENST00000631057 ATG3Q9NT62 314 aa9.56□□□□□ -0.88
GPC3-204ENST00000631057 COL5A2P05997 1499 aaPredicted RBP9.56□□□□□ -0.88
GPC3-204ENST00000631057 CIAO1O76071 339 aa9.55□□□□□ -0.88
GPC3-204ENST00000631057 TTLL7Q6ZT98 887 aa9.55□□□□□ -0.88
GPC3-204ENST00000631057 CDC37L1Q7L3B6 337 aa9.55□□□□□ -0.88
GPC3-204ENST00000631057 ATG9AQ7Z3C6 839 aa9.55□□□□□ -0.88
GPC3-204ENST00000631057 TCEANC2Q96MN5 208 aa9.55□□□□□ -0.88
GPC3-204ENST00000631057 PAG1Q9NWQ8 432 aa9.55□□□□□ -0.88
GPC3-204ENST00000631057 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.55□□□□□ -0.88
GPC3-204ENST00000631057 TAF6LQ9Y6J9 622 aa9.55□□□□□ -0.88
GPC3-204ENST00000631057 TOGARAM1Q9Y4F4 1720 aa9.55□□□□□ -0.88
GPC3-204ENST00000631057 KAT6BQ8WYB5 2073 aa9.55□□□□□ -0.88
GPC3-204ENST00000631057 EYA2O00167 538 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 CCDC192P0DO97 292 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 HCLS1P14317 486 aaPredicted RBP9.54□□□□□ -0.88
GPC3-204ENST00000631057 HSP90B1P14625 803 aaKnown RBP9.54□□□□□ -0.88
GPC3-204ENST00000631057 IL2RBP14784 551 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 Q6ZUG5 572 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 DDX46Q7L014 1031 aaKnown RBP9.54□□□□□ -0.88
GPC3-204ENST00000631057 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.54□□□□□ -0.88
GPC3-204ENST00000631057 NEUROD6Q96NK8 337 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 LLPHQ9BRT6 129 aaKnown RBP9.54□□□□□ -0.88
GPC3-204ENST00000631057 FUCA2Q9BTY2 467 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 DSCC1Q9BVC3 393 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 CARD10Q9BWT7 1032 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 ANKRD36CQ5JPF3 1778 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 ITGB4P16144 1822 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 GOLGA6L4A6NEF3 574 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 GOLIM4O00461 696 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 CYP21A2P08686 494 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 FGD1P98174 961 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 STK3Q13188 491 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 LRRFIP1Q32MZ4 808 aaKnown RBP9.54□□□□□ -0.88
GPC3-204ENST00000631057 ZMYM1Q5SVZ6 1142 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 CCDC129Q6ZRS4 1044 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 TTC6Q86TZ1 520 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 FERMT3Q86UX7 667 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 CHMP4CQ96CF2 233 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 NUP62CLQ9H1M0 184 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 KIF3AQ9Y496 699 aa9.54□□□□□ -0.88
GPC3-204ENST00000631057 SOS2Q07890 1332 aaPredicted RBP9.53□□□□□ -0.88
GPC3-204ENST00000631057 LTBP4Q8N2S1 1624 aa9.53□□□□□ -0.88
GPC3-204ENST00000631057 ADCY5O95622 1261 aa9.53□□□□□ -0.88
GPC3-204ENST00000631057 A1BGP04217 495 aa9.53□□□□□ -0.88
GPC3-204ENST00000631057 KIAA2012Q0VF49 1180 aa9.53□□□□□ -0.88
GPC3-204ENST00000631057 COL9A3Q14050 684 aaPredicted RBP9.53□□□□□ -0.88
GPC3-204ENST00000631057 MAP3K11Q16584 847 aa9.53□□□□□ -0.88
GPC3-204ENST00000631057 GIMAP6Q6P9H5 292 aa9.53□□□□□ -0.88
GPC3-204ENST00000631057 DHX32Q7L7V1 743 aaKnown RBP9.53□□□□□ -0.88
GPC3-204ENST00000631057 SPATA32Q96LK8 384 aa9.53□□□□□ -0.88
GPC3-204ENST00000631057 SEC62Q99442 399 aaKnown RBP9.53□□□□□ -0.88
GPC3-204ENST00000631057 DDX19AQ9NUU7 478 aaKnown RBP9.53□□□□□ -0.88
GPC3-204ENST00000631057 USP25Q9UHP3 1055 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms