RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 DDX60Q8IY21 1712 aaKnown RBP26.48■■□□□ 1.83
PNKP-220ENST00000627232 PSMA5P28066 241 aa26.48■■□□□ 1.83
PNKP-220ENST00000627232 TSGA10IPQ3SY00 556 aa26.48■■□□□ 1.83
PNKP-220ENST00000627232 LDHAL6AQ6ZMR3 332 aa26.48■■□□□ 1.83
PNKP-220ENST00000627232 XAGE2Q96GT9 111 aa26.48■■□□□ 1.83
PNKP-220ENST00000627232 JAKMIP1Q96N16 626 aaKnown RBP26.48■■□□□ 1.83
PNKP-220ENST00000627232 UTP14AQ9BVJ6 771 aaKnown RBP26.48■■□□□ 1.83
PNKP-220ENST00000627232 CYP46A1Q9Y6A2 500 aa26.48■■□□□ 1.83
PNKP-220ENST00000627232 NDUFB9Q9Y6M9 179 aa26.48■■□□□ 1.83
PNKP-220ENST00000627232 RPAP1Q9BWH6 1393 aaPredicted RBP26.48■■□□□ 1.83
PNKP-220ENST00000627232 GOLIM4O00461 696 aa26.47■■□□□ 1.83
PNKP-220ENST00000627232 RGL2O15211 777 aa26.47■■□□□ 1.83
PNKP-220ENST00000627232 AK2P54819 239 aa26.47■■□□□ 1.83
PNKP-220ENST00000627232 SUSD4Q5VX71 490 aa26.47■■□□□ 1.83
PNKP-220ENST00000627232 LIMCH1Q9UPQ0 1083 aa26.47■■□□□ 1.83
PNKP-220ENST00000627232 TRAK2O60296 914 aa26.46■■□□□ 1.83
PNKP-220ENST00000627232 METTL24Q5JXM2 366 aa26.46■■□□□ 1.83
PNKP-220ENST00000627232 TTC39AQ5SRH9 613 aa26.46■■□□□ 1.83
PNKP-220ENST00000627232 GORABQ5T7V8 394 aa26.46■■□□□ 1.83
PNKP-220ENST00000627232 ZNF652Q9Y2D9 606 aa26.46■■□□□ 1.83
PNKP-220ENST00000627232 BTAF1O14981 1849 aa26.46■■□□□ 1.83
PNKP-220ENST00000627232 GOLGA6L22H0YM25 854 aa26.45■■□□□ 1.83
PNKP-220ENST00000627232 ATP2B3Q16720 1220 aa26.45■■□□□ 1.83
PNKP-220ENST00000627232 LRRFIP1Q32MZ4 808 aaKnown RBP26.45■■□□□ 1.83
PNKP-220ENST00000627232 RUFY3Q7L099 469 aa26.45■■□□□ 1.83
PNKP-220ENST00000627232 CNNM1Q9NRU3 951 aa26.45■■□□□ 1.83
PNKP-220ENST00000627232 U3KPZ7 1027 aaPredicted RBP26.45■■□□□ 1.83
PNKP-220ENST00000627232 CNTNAP4Q9C0A0 1308 aa26.45■■□□□ 1.83
PNKP-220ENST00000627232 ADCK5Q3MIX3 580 aa26.44■■□□□ 1.82
PNKP-220ENST00000627232 CLEC4GQ6UXB4 293 aa26.44■■□□□ 1.82
PNKP-220ENST00000627232 NOL8Q76FK4 1167 aaKnown RBP26.44■■□□□ 1.82
PNKP-220ENST00000627232 PDRG1Q9NUG6 133 aa26.44■■□□□ 1.82
PNKP-220ENST00000627232 ARAP2Q8WZ64 1704 aa26.44■■□□□ 1.82
PNKP-220ENST00000627232 BAG4O95429 457 aaKnown RBP26.44■■□□□ 1.82
PNKP-220ENST00000627232 SKOR2Q2VWA4 1001 aaPredicted RBP26.44■■□□□ 1.82
PNKP-220ENST00000627232 ZMYM1Q5SVZ6 1142 aa26.44■■□□□ 1.82
PNKP-220ENST00000627232 RTL9Q8NET4 1388 aa26.44■■□□□ 1.82
PNKP-220ENST00000627232 ZSCAN31Q96LW9 406 aaPredicted RBP26.44■■□□□ 1.82
PNKP-220ENST00000627232 ALDH8A1Q9H2A2 487 aaPredicted RBP26.44■■□□□ 1.82
PNKP-220ENST00000627232 ADORA1P30542 326 aa26.43■■□□□ 1.82
PNKP-220ENST00000627232 VGLL2Q8N8G2 317 aa26.43■■□□□ 1.82
PNKP-220ENST00000627232 LINC00116Q8NCU8 138 aa26.43■■□□□ 1.82
PNKP-220ENST00000627232 ZNF512BQ96KM6 892 aaPredicted RBP26.43■■□□□ 1.82
PNKP-220ENST00000627232 MYH7P12883 1935 aa26.42■■□□□ 1.82
PNKP-220ENST00000627232 RNF113AO15541 343 aaKnown RBP26.42■■□□□ 1.82
PNKP-220ENST00000627232 KRT32Q14532 448 aa26.42■■□□□ 1.82
PNKP-220ENST00000627232 SCN7AQ01118 1682 aa26.42■■□□□ 1.82
PNKP-220ENST00000627232 MROH5Q6ZUA9 1318 aa26.41■■□□□ 1.82
PNKP-220ENST00000627232 NTSR2O95665 410 aa26.41■■□□□ 1.82
PNKP-220ENST00000627232 RC3H1Q5TC82 1133 aaKnown RBP26.41■■□□□ 1.82
PNKP-220ENST00000627232 CERKQ8TCT0 537 aa26.41■■□□□ 1.82
PNKP-220ENST00000627232 NIP7Q9Y221 180 aaKnown RBP eCLIP26.41■■□□□ 1.82
PNKP-220ENST00000627232 ZDHHC9Q9Y397 364 aa26.41■■□□□ 1.82
PNKP-220ENST00000627232 SH2B1Q9NRF2 756 aaPredicted RBP26.4■■□□□ 1.82
PNKP-220ENST00000627232 AKAP11Q9UKA4 1901 aa26.4■■□□□ 1.82
PNKP-220ENST00000627232 PDE8BO95263 885 aa26.39■■□□□ 1.82
PNKP-220ENST00000627232 ZFYP08048 801 aaPredicted RBP26.39■■□□□ 1.82
PNKP-220ENST00000627232 PKP1Q13835 747 aa26.39■■□□□ 1.82
PNKP-220ENST00000627232 SEC62Q99442 399 aaKnown RBP26.39■■□□□ 1.82
PNKP-220ENST00000627232 DSCC1Q9BVC3 393 aa26.39■■□□□ 1.82
PNKP-220ENST00000627232 BRD1O95696 1058 aa26.39■■□□□ 1.81
PNKP-220ENST00000627232 BLOC1S2Q6QNY1 142 aa26.39■■□□□ 1.81
PNKP-220ENST00000627232 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.39■■□□□ 1.81
PNKP-220ENST00000627232 HCLS1P14317 486 aaPredicted RBP26.38■■□□□ 1.81
PNKP-220ENST00000627232 CPA1P15085 419 aa26.38■■□□□ 1.81
PNKP-220ENST00000627232 CCDC152Q4G0S7 254 aa26.38■■□□□ 1.81
PNKP-220ENST00000627232 CCDC129Q6ZRS4 1044 aa26.38■■□□□ 1.81
PNKP-220ENST00000627232 SBF2Q86WG5 1849 aa26.37■■□□□ 1.81
PNKP-220ENST00000627232 ANKRD1Q15327 319 aa26.37■■□□□ 1.81
PNKP-220ENST00000627232 LY75O60449 1722 aa26.37■■□□□ 1.81
PNKP-220ENST00000627232 RPS6KB1P23443 525 aa26.36■■□□□ 1.81
PNKP-220ENST00000627232 FKBP4Q02790 459 aaKnown RBP eCLIP26.36■■□□□ 1.81
PNKP-220ENST00000627232 CHGBP05060 677 aa26.35■■□□□ 1.81
PNKP-220ENST00000627232 PUM3Q15397 648 aaKnown RBP26.35■■□□□ 1.81
PNKP-220ENST00000627232 MEX3CQ5U5Q3 659 aaKnown RBP26.35■■□□□ 1.81
PNKP-220ENST00000627232 GJD4Q96KN9 370 aaPredicted RBP26.35■■□□□ 1.81
PNKP-220ENST00000627232 FGFR2P21802 821 aa26.34■■□□□ 1.81
PNKP-220ENST00000627232 LPIN2Q92539 896 aa26.34■■□□□ 1.81
PNKP-220ENST00000627232 TAF1LQ8IZX4 1826 aa26.34■■□□□ 1.81
PNKP-220ENST00000627232 MAST3O60307 1309 aa26.34■■□□□ 1.81
PNKP-220ENST00000627232 UQCRFS1P1P0C7P4 283 aa26.34■■□□□ 1.81
PNKP-220ENST00000627232 ATRNO75882 1429 aa26.33■■□□□ 1.81
PNKP-220ENST00000627232 CASZ1Q86V15 1759 aa26.33■■□□□ 1.81
PNKP-220ENST00000627232 FAM177BA6PVY3 158 aa26.33■■□□□ 1.81
PNKP-220ENST00000627232 RPS6KA4O75676 772 aa26.33■■□□□ 1.81
PNKP-220ENST00000627232 ARID4AP29374 1257 aaPredicted RBP26.33■■□□□ 1.81
PNKP-220ENST00000627232 ZAP70P43403 619 aa26.33■■□□□ 1.81
PNKP-220ENST00000627232 SCARF1Q14162 830 aa26.33■■□□□ 1.81
PNKP-220ENST00000627232 TTF1Q15361 905 aaPredicted RBP26.33■■□□□ 1.81
PNKP-220ENST00000627232 ONECUT3O60422 494 aaPredicted RBP26.32■■□□□ 1.8
PNKP-220ENST00000627232 NEK1Q96PY6 1258 aa26.32■■□□□ 1.8
PNKP-220ENST00000627232 MPHOSPH8Q99549 860 aa26.32■■□□□ 1.8
PNKP-220ENST00000627232 WDR33Q9C0J8 1336 aaKnown RBP26.32■■□□□ 1.8
PNKP-220ENST00000627232 LAMA4Q16363 1823 aa26.31■■□□□ 1.8
PNKP-220ENST00000627232 COL24A1Q17RW2 1714 aa26.31■■□□□ 1.8
PNKP-220ENST00000627232 SLC5A1P13866 664 aa26.31■■□□□ 1.8
PNKP-220ENST00000627232 MCAMP43121 646 aa26.31■■□□□ 1.8
PNKP-220ENST00000627232 ZSCAN25Q6NSZ9 544 aa26.31■■□□□ 1.8
PNKP-220ENST00000627232 PTF1AQ7RTS3 328 aa26.31■■□□□ 1.8
PNKP-220ENST00000627232 AFF2P51816 1311 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms