RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 PASKQ96RG2 1323 aa16■□□□□ 0.15
PNKP-217ENST00000625216 RAD17O75943 681 aa16■□□□□ 0.15
PNKP-217ENST00000625216 CT47B1P0C2W7 299 aaPredicted RBP16■□□□□ 0.15
PNKP-217ENST00000625216 RARSP54136 660 aaKnown RBP16■□□□□ 0.15
PNKP-217ENST00000625216 IRX6P78412 446 aaPredicted RBP16■□□□□ 0.15
PNKP-217ENST00000625216 CNTROBQ8N137 903 aa16■□□□□ 0.15
PNKP-217ENST00000625216 JMYQ8N9B5 988 aa16■□□□□ 0.15
PNKP-217ENST00000625216 BSDC1Q9NW68 430 aaPredicted RBP16■□□□□ 0.15
PNKP-217ENST00000625216 RIMBP2O15034 1052 aa15.99■□□□□ 0.15
PNKP-217ENST00000625216 BCAR3O75815 825 aa15.99■□□□□ 0.15
PNKP-217ENST00000625216 CSF1RP07333 972 aa15.99■□□□□ 0.15
PNKP-217ENST00000625216 ATP2B4P23634 1241 aa15.99■□□□□ 0.15
PNKP-217ENST00000625216 GMPSP49915 693 aaPredicted RBP15.99■□□□□ 0.15
PNKP-217ENST00000625216 CASP7P55210 303 aa15.99■□□□□ 0.15
PNKP-217ENST00000625216 BEND3Q5T5X7 828 aa15.99■□□□□ 0.15
PNKP-217ENST00000625216 DPF2Q92785 391 aa15.99■□□□□ 0.15
PNKP-217ENST00000625216 BCL2L13Q9BXK5 485 aa15.99■□□□□ 0.15
PNKP-217ENST00000625216 GREM2Q9H772 168 aa15.99■□□□□ 0.15
PNKP-217ENST00000625216 XDHP47989 1333 aa15.98■□□□□ 0.15
PNKP-217ENST00000625216 YDJCA8MPS7 323 aa15.98■□□□□ 0.15
PNKP-217ENST00000625216 UFL1O94874 794 aa15.98■□□□□ 0.15
PNKP-217ENST00000625216 LRRC37AA6NMS7 1700 aa15.97■□□□□ 0.15
PNKP-217ENST00000625216 F6X3S4 739 aa15.97■□□□□ 0.15
PNKP-217ENST00000625216 G3V3G9 751 aa15.97■□□□□ 0.15
PNKP-217ENST00000625216 NEFLP07196 543 aa15.97■□□□□ 0.15
PNKP-217ENST00000625216 RPS12P25398 132 aaKnown RBP15.97■□□□□ 0.15
PNKP-217ENST00000625216 IGHMBP2P38935 993 aaKnown RBP15.97■□□□□ 0.15
PNKP-217ENST00000625216 DCAF8Q5TAQ9 597 aa15.97■□□□□ 0.15
PNKP-217ENST00000625216 MAP1SQ66K74 1059 aaPredicted RBP15.97■□□□□ 0.15
PNKP-217ENST00000625216 DBNDD1Q9H9R9 158 aa15.97■□□□□ 0.15
PNKP-217ENST00000625216 MINPP1Q9UNW1 487 aa15.97■□□□□ 0.15
PNKP-217ENST00000625216 CACNA1FO60840 1977 aa15.96■□□□□ 0.15
PNKP-217ENST00000625216 DUOX1Q9NRD9 1551 aa15.96■□□□□ 0.15
PNKP-217ENST00000625216 TMEM88BA6NKF7 163 aa15.96■□□□□ 0.15
PNKP-217ENST00000625216 H7C1D1 291 aa15.96■□□□□ 0.15
PNKP-217ENST00000625216 PLIN1O60240 522 aa15.96■□□□□ 0.15
PNKP-217ENST00000625216 ECE2O60344 883 aa15.96■□□□□ 0.15
PNKP-217ENST00000625216 ALDH1L1O75891 902 aa15.96■□□□□ 0.15
PNKP-217ENST00000625216 DOK7Q18PE1 504 aa15.96■□□□□ 0.15
PNKP-217ENST00000625216 ZC3H15Q8WU90 426 aaKnown RBP15.96■□□□□ 0.15
PNKP-217ENST00000625216 CNOT7Q9UIV1 285 aaKnown RBP15.96■□□□□ 0.15
PNKP-217ENST00000625216 PSMD14O00487 310 aa15.95■□□□□ 0.14
PNKP-217ENST00000625216 ITGA6P23229 1130 aa15.95■□□□□ 0.14
PNKP-217ENST00000625216 SSH1Q8WYL5 1049 aa15.95■□□□□ 0.14
PNKP-217ENST00000625216 PGAP2Q9UHJ9 254 aa15.95■□□□□ 0.14
PNKP-217ENST00000625216 TAF1P21675 1872 aa15.95■□□□□ 0.14
PNKP-217ENST00000625216 GRM8O00222 908 aa15.94■□□□□ 0.14
PNKP-217ENST00000625216 VIL1P09327 827 aaKnown RBP15.94■□□□□ 0.14
PNKP-217ENST00000625216 PODNQ7Z5L7 613 aa15.94■□□□□ 0.14
PNKP-217ENST00000625216 MRPL50Q8N5N7 158 aaKnown RBP15.94■□□□□ 0.14
PNKP-217ENST00000625216 MPHOSPH8Q99549 860 aa15.94■□□□□ 0.14
PNKP-217ENST00000625216 SRCIN1Q9C0H9 1055 aa15.94■□□□□ 0.14
PNKP-217ENST00000625216 ANKRD2Q9GZV1 360 aa15.94■□□□□ 0.14
PNKP-217ENST00000625216 C9orf78Q9NZ63 289 aaPredicted RBP15.94■□□□□ 0.14
PNKP-217ENST00000625216 LEMD3Q9Y2U8 911 aa15.94■□□□□ 0.14
PNKP-217ENST00000625216 COL4A1P02462 1669 aa15.93■□□□□ 0.14
PNKP-217ENST00000625216 ANKRD18BA2A2Z9 1011 aa15.93■□□□□ 0.14
PNKP-217ENST00000625216 CCT4P50991 539 aaKnown RBP15.93■□□□□ 0.14
PNKP-217ENST00000625216 FOXO4P98177 505 aa15.93■□□□□ 0.14
PNKP-217ENST00000625216 SLC4A10Q6U841 1118 aa15.93■□□□□ 0.14
PNKP-217ENST00000625216 GPR101Q96P66 508 aaPredicted RBP15.93■□□□□ 0.14
PNKP-217ENST00000625216 SMC4Q9NTJ3 1288 aa15.93■□□□□ 0.14
PNKP-217ENST00000625216 ZBTB12Q9Y330 459 aaPredicted RBP15.93■□□□□ 0.14
PNKP-217ENST00000625216 PTPRCP08575 1304 aa15.93■□□□□ 0.14
PNKP-217ENST00000625216 ADAMTSL1Q8N6G6 1762 aa15.92■□□□□ 0.14
PNKP-217ENST00000625216 IFIT5Q13325 482 aaKnown RBP15.92■□□□□ 0.14
PNKP-217ENST00000625216 FAM161AQ3B820 660 aa15.92■□□□□ 0.14
PNKP-217ENST00000625216 ALDH1L2Q3SY69 923 aa15.92■□□□□ 0.14
PNKP-217ENST00000625216 MICALL2Q8IY33 904 aa15.92■□□□□ 0.14
PNKP-217ENST00000625216 KCNQ5Q9NR82 932 aa15.92■□□□□ 0.14
PNKP-217ENST00000625216 LTBP1Q14766 1721 aa15.91■□□□□ 0.14
PNKP-217ENST00000625216 MED23Q9ULK4 1368 aa15.91■□□□□ 0.14
PNKP-217ENST00000625216 HIRAP54198 1017 aaPredicted RBP15.91■□□□□ 0.14
PNKP-217ENST00000625216 C20orf194Q5TEA3 1177 aa15.91■□□□□ 0.14
PNKP-217ENST00000625216 AGBL3Q8NEM8 1001 aa15.91■□□□□ 0.14
PNKP-217ENST00000625216 LMBR1LQ6UX01 489 aa15.9■□□□□ 0.14
PNKP-217ENST00000625216 CDC37L1Q7L3B6 337 aa15.9■□□□□ 0.14
PNKP-217ENST00000625216 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.9■□□□□ 0.14
PNKP-217ENST00000625216 COA1Q9GZY4 146 aa15.9■□□□□ 0.14
PNKP-217ENST00000625216 MKRN1Q9UHC7 482 aaKnown RBP15.9■□□□□ 0.14
PNKP-217ENST00000625216 TNNQ9UQP3 1299 aa15.9■□□□□ 0.14
PNKP-217ENST00000625216 CNTNAP1P78357 1384 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 USP17L3A6NCW0 530 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 USP17L4A6NCW7 530 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 RASSF10A6NK89 507 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 CCDC57Q2TAC2 916 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 RSBN1LQ6PCB5 846 aaPredicted RBP15.89■□□□□ 0.13
PNKP-217ENST00000625216 USP17L1Q7RTZ2 530 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 TRPM4Q8TD43 1214 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 CHMP3Q9Y3E7 222 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 ZNF804BA4D1E1 1349 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 UTYO14607 1347 aa15.89■□□□□ 0.13
PNKP-217ENST00000625216 ZNF609O15014 1411 aa15.88■□□□□ 0.13
PNKP-217ENST00000625216 BRPF1P55201 1214 aaPredicted RBP15.88■□□□□ 0.13
PNKP-217ENST00000625216 CHRNDQ07001 517 aa15.88■□□□□ 0.13
PNKP-217ENST00000625216 DEFB115Q30KQ5 88 aa15.88■□□□□ 0.13
PNKP-217ENST00000625216 SAMD7Q7Z3H4 446 aa15.88■□□□□ 0.13
PNKP-217ENST00000625216 FRAT1Q92837 279 aaPredicted RBP15.88■□□□□ 0.13
PNKP-217ENST00000625216 KIF16BQ96L93 1317 aa15.88■□□□□ 0.13
PNKP-217ENST00000625216 SHTN1A0MZ66 631 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms