RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 MBIPQ9NS73 344 aa10.14□□□□□ -0.79
VCL-206ENST00000623461 ZNF530Q6P9A1 599 aaPredicted RBP10.13□□□□□ -0.79
VCL-206ENST00000623461 LMBR1Q8WVP7 490 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 TRIM7Q9C029 511 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 F6X3S4 739 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 TMEM266Q2M3C6 531 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 BRAPQ7Z569 592 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 NCOA7Q8NI08 942 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 RHPN1Q8TCX5 695 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 CCDC77Q9BR77 488 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 LZTFL1Q9NQ48 299 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 TOPBP1Q92547 1522 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 FAM135AQ9P2D6 1515 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 WDHD1O75717 1129 aaPredicted RBP10.13□□□□□ -0.79
VCL-206ENST00000623461 FAM160A1Q05DH4 1040 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 DDX46Q7L014 1031 aaKnown RBP10.13□□□□□ -0.79
VCL-206ENST00000623461 CCDC8Q9H0W5 538 aaPredicted RBP10.13□□□□□ -0.79
VCL-206ENST00000623461 PAXIP1Q6ZW49 1069 aaPredicted RBP10.13□□□□□ -0.79
VCL-206ENST00000623461 TRIM47Q96LD4 638 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 METAP2P50579 478 aaKnown RBP eCLIP10.13□□□□□ -0.793e-6■■□□□ 14.5
VCL-206ENST00000623461 BUB1BO60566 1050 aaPredicted RBP10.13□□□□□ -0.79
VCL-206ENST00000623461 RRAGBQ5VZM2 374 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 RUFY3Q7L099 469 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 MCM10Q7L590 875 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 C17orf53Q8N3J3 647 aaPredicted RBP10.13□□□□□ -0.79
VCL-206ENST00000623461 SLC52A1Q9NWF4 448 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 PIK3R4Q99570 1358 aa10.13□□□□□ -0.79
VCL-206ENST00000623461 CCDC172P0C7W6 258 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 RLBP1P12271 317 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 IKQ13123 557 aaPredicted RBP10.12□□□□□ -0.79
VCL-206ENST00000623461 NUTM2AQ8IVF1 878 aaPredicted RBP10.12□□□□□ -0.79
VCL-206ENST00000623461 ABTB2Q8N961 1025 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 PPFIBP2Q8ND30 876 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 PLVAPQ9BX97 442 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 TMEM63CQ9P1W3 806 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 EIF2AK4Q9P2K8 1649 aaKnown RBP10.12□□□□□ -0.79
VCL-206ENST00000623461 A0A1W2PRG0 241 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 GBP1P32455 592 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 TNNC1P63316 161 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 PPFIA1Q13136 1202 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 TTC41PQ6P2S7 1318 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 ARHGAP6O43182 974 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 ATP8B2P98198 1209 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 BRF1Q92994 677 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 NAPBQ9H115 298 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 CALML4Q96GE6 196 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 MAP3K9P80192 1104 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 SETDB1Q15047 1291 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 LRCH2Q5VUJ6 765 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 TCP11L1Q9NUJ3 509 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 NLRP2Q9NX02 1062 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 RAD50Q92878 1312 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 EFCAB8A8MWE9 144 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 IFIT3O14879 490 aaKnown RBP10.12□□□□□ -0.79
VCL-206ENST00000623461 RRS1Q15050 365 aaKnown RBP10.12□□□□□ -0.79
VCL-206ENST00000623461 CCDC40Q4G0X9 1142 aa10.12□□□□□ -0.79
VCL-206ENST00000623461 TATP17735 454 aaPredicted RBP10.11□□□□□ -0.79
VCL-206ENST00000623461 PPP1R42Q7Z4L9 355 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 STIM2Q9P246 746 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 GUCA1BQ9UMX6 200 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 IDH1O75874 414 aaKnown RBP10.11□□□□□ -0.79
VCL-206ENST00000623461 CHMLP26374 656 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 NLRP5P59047 1200 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 SELENOSQ9BQE4 189 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 CFAP74Q9C0B2 1584 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 Q6ZUG5 572 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 GIGYF1O75420 1035 aaPredicted RBP10.11□□□□□ -0.79
VCL-206ENST00000623461 ZFYP08048 801 aaPredicted RBP10.11□□□□□ -0.79
VCL-206ENST00000623461 MYL6BP14649 208 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 SH3BGRP55822 239 aaPredicted RBP10.11□□□□□ -0.79
VCL-206ENST00000623461 PRPF4BQ13523 1007 aaKnown RBP10.11□□□□□ -0.79
VCL-206ENST00000623461 CROCCP2Q86T23 111 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 CAPZA3Q96KX2 299 aa10.11□□□□□ -0.79
VCL-206ENST00000623461 CDK13Q14004 1512 aaKnown RBP10.11□□□□□ -0.79
VCL-206ENST00000623461 CCDC194A0A1B0GVG4 234 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 SEPT6Q14141 434 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 RPGRIP1Q96KN7 1286 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 LUC7L2Q9Y383 392 aaKnown RBP10.1□□□□□ -0.79
VCL-206ENST00000623461 BLMP54132 1417 aaPredicted RBP10.1□□□□□ -0.79
VCL-206ENST00000623461 PSMA7O14818 248 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 BRD1O95696 1058 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 NUTM2GQ5VZR2 741 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 IQCA1Q86XH1 822 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 VCXQ9H320 206 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 ZNF287Q9HBT7 754 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 EXOC1Q9NV70 894 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 CCDC42Q96M95 316 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 ALG1Q9BT22 464 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 GOLGA6BA6NDN3 693 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 NEBLO76041 1014 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 CATIPQ7Z7H3 387 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 CACNA2D3Q8IZS8 1091 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 CTNNBL1Q8WYA6 563 aaPredicted RBP10.1□□□□□ -0.79
VCL-206ENST00000623461 ZNF622Q969S3 477 aaKnown RBP eCLIP10.1□□□□□ -0.79
VCL-206ENST00000623461 SEC63Q9UGP8 760 aaKnown RBP10.1□□□□□ -0.79
VCL-206ENST00000623461 KIF3CO14782 793 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 ATF3P18847 181 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 ATP5DP30049 168 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 TSHZ3Q63HK5 1081 aa10.1□□□□□ -0.79
VCL-206ENST00000623461 MED4Q9NPJ6 270 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms