RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 GPT2Q8TD30 523 aa16.28■□□□□ 0.2
NEK3-205ENST00000610828 SH3TC1Q8TE82 1336 aa16.27■□□□□ 0.2
NEK3-205ENST00000610828 RPS6KB1P23443 525 aa16.27■□□□□ 0.2
NEK3-205ENST00000610828 PIP4K2BP78356 416 aa16.27■□□□□ 0.2
NEK3-205ENST00000610828 CCDC158Q5M9N0 1113 aa16.27■□□□□ 0.2
NEK3-205ENST00000610828 TTLL11Q8NHH1 800 aa16.27■□□□□ 0.2
NEK3-205ENST00000610828 TPCN1Q9ULQ1 816 aa16.27■□□□□ 0.2
NEK3-205ENST00000610828 IRS4O14654 1257 aaPredicted RBP16.27■□□□□ 0.19
NEK3-205ENST00000610828 SYT1P21579 422 aa16.27■□□□□ 0.19
NEK3-205ENST00000610828 ITGA6P23229 1130 aa16.27■□□□□ 0.19
NEK3-205ENST00000610828 TSGA10IPQ3SY00 556 aa16.27■□□□□ 0.19
NEK3-205ENST00000610828 TTC39AQ5SRH9 613 aa16.27■□□□□ 0.19
NEK3-205ENST00000610828 NECAB1Q8N987 351 aa16.27■□□□□ 0.19
NEK3-205ENST00000610828 XAGE2Q96GT9 111 aa16.27■□□□□ 0.19
NEK3-205ENST00000610828 GREM2Q9H772 168 aa16.27■□□□□ 0.19
NEK3-205ENST00000610828 U3KPZ7 1027 aaPredicted RBP16.27■□□□□ 0.19
NEK3-205ENST00000610828 NRAPQ86VF7 1730 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 STX6O43752 255 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 DTNBO60941 627 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 GJB2P29033 226 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 ADORA1P30542 326 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 CTSWP56202 376 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 FKBP4Q02790 459 aaKnown RBP eCLIP16.26■□□□□ 0.19
NEK3-205ENST00000610828 KRT32Q14532 448 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 ANKRD36CQ5JPF3 1778 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 ERVV-1B6SEH8 477 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 ANKRD1Q15327 319 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 LDHAL6AQ6ZMR3 332 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 MARCH10Q8NA82 808 aaPredicted RBP16.26■□□□□ 0.19
NEK3-205ENST00000610828 HELLSQ9NRZ9 838 aa16.26■□□□□ 0.19
NEK3-205ENST00000610828 NUP98P52948 1817 aa16.25■□□□□ 0.19
NEK3-205ENST00000610828 ATP6V1AP38606 617 aa16.25■□□□□ 0.19
NEK3-205ENST00000610828 METTL24Q5JXM2 366 aa16.25■□□□□ 0.19
NEK3-205ENST00000610828 UBN2Q6ZU65 1347 aa16.25■□□□□ 0.19
NEK3-205ENST00000610828 ANKRD18BA2A2Z9 1011 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 CYP21A2P08686 494 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 ZSCAN22P10073 491 aaPredicted RBP16.24■□□□□ 0.19
NEK3-205ENST00000610828 ST3GAL1Q11201 340 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 ZSCAN23Q3MJ62 389 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.24■□□□□ 0.19
NEK3-205ENST00000610828 SPATA31A5Q5VU36 1347 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 SPATA31A7Q8IWB4 1347 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 ZMYM1Q5SVZ6 1142 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 NEK1Q96PY6 1258 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 GDPD2Q9HCC8 539 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 CNNM1Q9NRU3 951 aa16.24■□□□□ 0.19
NEK3-205ENST00000610828 TOB2Q14106 344 aaPredicted RBP16.23■□□□□ 0.19
NEK3-205ENST00000610828 CCDC87Q9NVE4 849 aa16.23■□□□□ 0.19
NEK3-205ENST00000610828 RBM27Q9P2N5 1060 aaKnown RBP16.23■□□□□ 0.19
NEK3-205ENST00000610828 NSFL1CQ9UNZ2 370 aaKnown RBP16.23■□□□□ 0.19
NEK3-205ENST00000610828 RIPOR2Q9Y4F9 1068 aa16.23■□□□□ 0.19
NEK3-205ENST00000610828 RNF113AO15541 343 aaKnown RBP16.23■□□□□ 0.19
NEK3-205ENST00000610828 PDE8AO60658 829 aa16.23■□□□□ 0.19
NEK3-205ENST00000610828 CRKLP46109 303 aaKnown RBP16.23■□□□□ 0.19
NEK3-205ENST00000610828 EIF5P55010 431 aaKnown RBP16.23■□□□□ 0.19
NEK3-205ENST00000610828 TICAM2Q86XR7 235 aa16.23■□□□□ 0.19
NEK3-205ENST00000610828 ALDH8A1Q9H2A2 487 aaPredicted RBP16.23■□□□□ 0.19
NEK3-205ENST00000610828 MYH3P11055 1940 aa16.23■□□□□ 0.19
NEK3-205ENST00000610828 RIC1Q4ADV7 1423 aa16.23■□□□□ 0.19
NEK3-205ENST00000610828 LOC102724428A0A0B4J2F2 783 aa16.22■□□□□ 0.19
NEK3-205ENST00000610828 MBD3O95983 291 aa16.22■□□□□ 0.19
NEK3-205ENST00000610828 SIK1P57059 783 aa16.22■□□□□ 0.19
NEK3-205ENST00000610828 ATP2B3Q16720 1220 aa16.22■□□□□ 0.19
NEK3-205ENST00000610828 INTS5Q6P9B9 1019 aaKnown RBP16.22■□□□□ 0.19
NEK3-205ENST00000610828 ZNF34Q8IZ26 560 aa16.22■□□□□ 0.19
NEK3-205ENST00000610828 SPEF2Q9C093 1822 aa16.22■□□□□ 0.19
NEK3-205ENST00000610828 MAST3O60307 1309 aa16.22■□□□□ 0.19
NEK3-205ENST00000610828 F13A1P00488 732 aa16.21■□□□□ 0.19
NEK3-205ENST00000610828 ZNF445P59923 1031 aa16.21■□□□□ 0.19
NEK3-205ENST00000610828 STK3Q13188 491 aa16.21■□□□□ 0.19
NEK3-205ENST00000610828 SCARF1Q14162 830 aa16.21■□□□□ 0.19
NEK3-205ENST00000610828 DSCC1Q9BVC3 393 aa16.21■□□□□ 0.19
NEK3-205ENST00000610828 FAM177BA6PVY3 158 aa16.21■□□□□ 0.19
NEK3-205ENST00000610828 HSPD1P10809 573 aaKnown RBP16.21■□□□□ 0.19
NEK3-205ENST00000610828 TMEM63CQ9P1W3 806 aa16.21■□□□□ 0.19
NEK3-205ENST00000610828 TCHHQ07283 1943 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 TOM1O60784 492 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 ZAP70P43403 619 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 LRRFIP1Q32MZ4 808 aaKnown RBP16.2■□□□□ 0.18
NEK3-205ENST00000610828 PI16Q6UXB8 463 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 USP48Q86UV5 1035 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 VPS37CA5D8V6 355 aaPredicted RBP16.2■□□□□ 0.18
NEK3-205ENST00000610828 M0R2C6 588 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 ITPK1Q13572 414 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 BARGINQ6ZT62 677 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 CNPY2Q9Y2B0 182 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 ATP6V1DQ9Y5K8 247 aa16.2■□□□□ 0.18
NEK3-205ENST00000610828 WASHC4Q2M389 1173 aa16.19■□□□□ 0.18
NEK3-205ENST00000610828 Q6ZUG5 572 aa16.19■□□□□ 0.18
NEK3-205ENST00000610828 OSBP2Q969R2 916 aa16.19■□□□□ 0.18
NEK3-205ENST00000610828 MTMR6Q9Y217 621 aa16.19■□□□□ 0.18
NEK3-205ENST00000610828 SLIT2O94813 1529 aa16.19■□□□□ 0.18
NEK3-205ENST00000610828 GADD45BO75293 160 aaPredicted RBP16.19■□□□□ 0.18
NEK3-205ENST00000610828 HCLS1P14317 486 aaPredicted RBP16.19■□□□□ 0.18
NEK3-205ENST00000610828 FGD1P98174 961 aa16.19■□□□□ 0.18
NEK3-205ENST00000610828 SUSD4Q5VX71 490 aa16.19■□□□□ 0.18
NEK3-205ENST00000610828 LARP1BQ659C4 914 aaKnown RBP16.19■□□□□ 0.18
NEK3-205ENST00000610828 STOX1Q6ZVD7 989 aa16.19■□□□□ 0.18
NEK3-205ENST00000610828 KCNQ2O43526 872 aa16.18■□□□□ 0.18
NEK3-205ENST00000610828 HSP90B1P14625 803 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms