RNA–Protein interactions for RNA: ENST00000607559.1

TPM2-208, Transcript of tropomyosin 2, human

TSL 2

Gene TPM2, Length 518 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM2-208	ENST00000607559	LAMB2	P55268	1798 aa		13.73	□□□□□ -0.21
TPM2-208	ENST00000607559	DDX60	Q8IY21	1712 aa	Known RBP	13.73	□□□□□ -0.21
TPM2-208	ENST00000607559	AOC3	Q16853	763 aa		13.73	□□□□□ -0.21
TPM2-208	ENST00000607559	CCDC152	Q4G0S7	254 aa		13.73	□□□□□ -0.21
TPM2-208	ENST00000607559	CASP7	P55210	303 aa		13.72	□□□□□ -0.21
TPM2-208	ENST00000607559	RTL5	Q5HYW3	569 aa	Predicted RBP	13.72	□□□□□ -0.21
TPM2-208	ENST00000607559	USP50	Q70EL3	339 aa	Predicted RBP	13.72	□□□□□ -0.21
TPM2-208	ENST00000607559	LINS1	Q8NG48	757 aa		13.72	□□□□□ -0.21
TPM2-208	ENST00000607559	TTLL11	Q8NHH1	800 aa		13.72	□□□□□ -0.21
TPM2-208	ENST00000607559	POLL	Q9UGP5	575 aa		13.72	□□□□□ -0.21
TPM2-208	ENST00000607559	PGAP2	Q9UHJ9	254 aa		13.72	□□□□□ -0.21
TPM2-208	ENST00000607559	LRRC37A	A6NMS7	1700 aa		13.72	□□□□□ -0.21
TPM2-208	ENST00000607559	DUOX1	Q9NRD9	1551 aa		13.71	□□□□□ -0.21
TPM2-208	ENST00000607559	CSF1R	P07333	972 aa		13.71	□□□□□ -0.21
TPM2-208	ENST00000607559	GCKR	Q14397	625 aa		13.71	□□□□□ -0.21
TPM2-208	ENST00000607559	WASHC4	Q2M389	1173 aa		13.71	□□□□□ -0.21
TPM2-208	ENST00000607559	DNAAF4	Q8WXU2	420 aa		13.71	□□□□□ -0.21
TPM2-208	ENST00000607559	SEC31B	Q9NQW1	1179 aa		13.71	□□□□□ -0.21
TPM2-208	ENST00000607559	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.71	□□□□□ -0.21
TPM2-208	ENST00000607559	ADAMTSL1	Q8N6G6	1762 aa		13.71	□□□□□ -0.22
TPM2-208	ENST00000607559	EPS15	P42566	896 aa		13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	CTSW	P56202	376 aa		13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	GPSM2	P81274	684 aa		13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	TNIP1	Q15025	636 aa		13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	CWF19L2	Q2TBE0	894 aa	Known RBP	13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	EAPP	Q56P03	285 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	CIAPIN1	Q6FI81	312 aa		13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	TBC1D16	Q8TBP0	767 aa		13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	SP7	Q8TDD2	431 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	DPF2	Q92785	391 aa		13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	ZNF428	Q96B54	188 aa		13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	BSDC1	Q9NW68	430 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	GPRC5D	Q9NZD1	345 aa		13.7	□□□□□ -0.22
TPM2-208	ENST00000607559	YDJC	A8MPS7	323 aa		13.69	□□□□□ -0.22
TPM2-208	ENST00000607559	CCER2	I3L3R5	266 aa		13.69	□□□□□ -0.22
TPM2-208	ENST00000607559	BEND3	Q5T5X7	828 aa		13.69	□□□□□ -0.22
TPM2-208	ENST00000607559	EYA3	Q99504	573 aa		13.69	□□□□□ -0.22
TPM2-208	ENST00000607559	ADARB2	Q9NS39	739 aa	Known RBP	13.69	□□□□□ -0.22
TPM2-208	ENST00000607559	SALL2	Q9Y467	1007 aa	Predicted RBP	13.69	□□□□□ -0.22
TPM2-208	ENST00000607559	GJA3	Q9Y6H8	435 aa		13.69	□□□□□ -0.22
TPM2-208	ENST00000607559	COL4A1	P02462	1669 aa		13.69	□□□□□ -0.22
TPM2-208	ENST00000607559	TMEM88B	A6NKF7	163 aa		13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	HSPA1A	P0DMV8	641 aa	Known RBP	13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	HSPA1B	P0DMV9	641 aa	Known RBP	13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	LMOD1	P29536	600 aa	Predicted RBP	13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	FKBP5	Q13451	457 aa	Predicted RBP	13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	RASEF	Q8IZ41	740 aa		13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	TRMT2A	Q8IZ69	625 aa	Known RBP	13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	CNTROB	Q8N137	903 aa		13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	ZC3H15	Q8WU90	426 aa	Known RBP	13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	JARID2	Q92833	1246 aa	Predicted RBP	13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	CDC5L	Q99459	802 aa	Known RBP	13.68	□□□□□ -0.22
TPM2-208	ENST00000607559	LTBP1	Q14766	1721 aa		13.67	□□□□□ -0.22
TPM2-208	ENST00000607559		E9PSI1	815 aa		13.67	□□□□□ -0.22
TPM2-208	ENST00000607559	ANKRD18A	Q8IVF6	992 aa		13.67	□□□□□ -0.22
TPM2-208	ENST00000607559	MKRN1	Q9UHC7	482 aa	Known RBP	13.67	□□□□□ -0.22
TPM2-208	ENST00000607559	CACNA1F	O60840	1977 aa		13.67	□□□□□ -0.22
TPM2-208	ENST00000607559	ZNF609	O15014	1411 aa		13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	C6orf229	H3BNL8	230 aa		13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	VIL1	P09327	827 aa	Known RBP	13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	RPS12	P25398	132 aa	Known RBP	13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	GMPS	P49915	693 aa	Predicted RBP	13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	NUBP1	P53384	320 aa		13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	SLFN5	Q08AF3	891 aa		13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	UBE3B	Q7Z3V4	1068 aa		13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	GREM2	Q9H772	168 aa		13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	GGA1	Q9UJY5	639 aa		13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	MINPP1	Q9UNW1	487 aa		13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	CNTNAP1	P78357	1384 aa		13.66	□□□□□ -0.22
TPM2-208	ENST00000607559	XDH	P47989	1333 aa		13.65	□□□□□ -0.22
TPM2-208	ENST00000607559	ALDH1L1	O75891	902 aa		13.65	□□□□□ -0.22
TPM2-208	ENST00000607559	RAD17	O75943	681 aa		13.65	□□□□□ -0.22
TPM2-208	ENST00000607559	ATP2B4	P23634	1241 aa		13.65	□□□□□ -0.22
TPM2-208	ENST00000607559	TNS4	Q8IZW8	715 aa		13.65	□□□□□ -0.22
TPM2-208	ENST00000607559	TAF1	P21675	1872 aa		13.65	□□□□□ -0.22
TPM2-208	ENST00000607559	PSMD14	O00487	310 aa		13.64	□□□□□ -0.23
TPM2-208	ENST00000607559	HIRA	P54198	1017 aa	Predicted RBP	13.64	□□□□□ -0.23
TPM2-208	ENST00000607559	FOXO4	P98177	505 aa		13.64	□□□□□ -0.23
TPM2-208	ENST00000607559	MAP1S	Q66K74	1059 aa	Predicted RBP	13.64	□□□□□ -0.23
TPM2-208	ENST00000607559	PODN	Q7Z5L7	613 aa		13.64	□□□□□ -0.23
TPM2-208	ENST00000607559	ANKIB1	Q9P2G1	1089 aa		13.64	□□□□□ -0.23
TPM2-208	ENST00000607559	CNOT7	Q9UIV1	285 aa	Known RBP	13.64	□□□□□ -0.23
TPM2-208	ENST00000607559	UTY	O14607	1347 aa		13.64	□□□□□ -0.23
TPM2-208	ENST00000607559	RASSF10	A6NK89	507 aa		13.63	□□□□□ -0.23
TPM2-208	ENST00000607559		F6X3S4	739 aa		13.63	□□□□□ -0.23
TPM2-208	ENST00000607559	ECE2	O60344	883 aa		13.63	□□□□□ -0.23
TPM2-208	ENST00000607559	GML	Q99445	158 aa		13.63	□□□□□ -0.23
TPM2-208	ENST00000607559	DBNDD1	Q9H9R9	158 aa		13.63	□□□□□ -0.23
TPM2-208	ENST00000607559	KCNQ5	Q9NR82	932 aa		13.63	□□□□□ -0.23
TPM2-208	ENST00000607559	LEMD3	Q9Y2U8	911 aa		13.63	□□□□□ -0.23
TPM2-208	ENST00000607559		H7C1D1	291 aa		13.62	□□□□□ -0.23
TPM2-208	ENST00000607559	RIMBP2	O15034	1052 aa		13.62	□□□□□ -0.23
TPM2-208	ENST00000607559	UFL1	O94874	794 aa		13.62	□□□□□ -0.23
TPM2-208	ENST00000607559	CT47B1	P0C2W7	299 aa	Predicted RBP	13.62	□□□□□ -0.23
TPM2-208	ENST00000607559	ITGA6	P23229	1130 aa		13.62	□□□□□ -0.23
TPM2-208	ENST00000607559	BRPF1	P55201	1214 aa	Predicted RBP	13.62	□□□□□ -0.23
TPM2-208	ENST00000607559	MRPL50	Q8N5N7	158 aa	Known RBP	13.62	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms