RNA–Protein interactions for RNA: ENST00000600244.5

SSBP4-207, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 622 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-207ENST00000600244 C6orf229H3BNL8 230 aa23.4■■□□□ 1.34
SSBP4-207ENST00000600244 EN2P19622 333 aaPredicted RBP23.4■■□□□ 1.34
SSBP4-207ENST00000600244 OTOP1Q7RTM1 612 aa23.4■■□□□ 1.34
SSBP4-207ENST00000600244 NLRP10Q86W26 655 aa23.4■■□□□ 1.34
SSBP4-207ENST00000600244 PNISRQ8TF01 805 aaKnown RBP23.4■■□□□ 1.34
SSBP4-207ENST00000600244 TRIM17Q9Y577 477 aa23.4■■□□□ 1.34
SSBP4-207ENST00000600244 GPSM2P81274 684 aa23.39■■□□□ 1.33
SSBP4-207ENST00000600244 SREBF2Q12772 1141 aa23.39■■□□□ 1.33
SSBP4-207ENST00000600244 SZT2Q5T011 3432 aa23.39■■□□□ 1.33
SSBP4-207ENST00000600244 SCN9AQ15858 1988 aa23.39■■□□□ 1.33
SSBP4-207ENST00000600244 ZNF609O15014 1411 aa23.39■■□□□ 1.33
SSBP4-207ENST00000600244 KDM3BQ7LBC6 1761 aa23.38■■□□□ 1.33
SSBP4-207ENST00000600244 PDIA6Q15084 440 aa23.38■■□□□ 1.33
SSBP4-207ENST00000600244 AGBL3Q8NEM8 1001 aa23.37■■□□□ 1.33
SSBP4-207ENST00000600244 NECTIN2Q92692 538 aa23.37■■□□□ 1.33
SSBP4-207ENST00000600244 CELF1Q92879 486 aaKnown RBP23.37■■□□□ 1.33
SSBP4-207ENST00000600244 EYA3Q99504 573 aa23.37■■□□□ 1.33
SSBP4-207ENST00000600244 THUMPD2Q9BTF0 503 aaKnown RBP23.37■■□□□ 1.33
SSBP4-207ENST00000600244 SH3TC1Q8TE82 1336 aa23.36■■□□□ 1.33
SSBP4-207ENST00000600244 MKRN3Q13064 507 aaKnown RBP23.36■■□□□ 1.33
SSBP4-207ENST00000600244 PRAMEF18Q5VWM3 479 aa23.36■■□□□ 1.33
SSBP4-207ENST00000600244 TBC1D16Q8TBP0 767 aa23.36■■□□□ 1.33
SSBP4-207ENST00000600244 ARMC5Q96C12 935 aa23.36■■□□□ 1.33
SSBP4-207ENST00000600244 OTUD5Q96G74 571 aa23.36■■□□□ 1.33
SSBP4-207ENST00000600244 TRMT112Q9UI30 125 aaKnown RBP23.36■■□□□ 1.33
SSBP4-207ENST00000600244 SCAF8Q9UPN6 1271 aaKnown RBP23.36■■□□□ 1.33
SSBP4-207ENST00000600244 DDX60Q8IY21 1712 aaKnown RBP23.36■■□□□ 1.33
SSBP4-207ENST00000600244 GMLQ99445 158 aa23.35■■□□□ 1.33
SSBP4-207ENST00000600244 CEP290O15078 2479 aa23.34■■□□□ 1.33
SSBP4-207ENST00000600244 ALDH1A1P00352 501 aa23.34■■□□□ 1.33
SSBP4-207ENST00000600244 U2AF1L5P0DN76 240 aaPredicted RBP23.34■■□□□ 1.33
SSBP4-207ENST00000600244 U2AF1Q01081 240 aaKnown RBP eCLIP23.34■■□□□ 1.33
SSBP4-207ENST00000600244 HSP90AB3PQ58FF7 597 aa23.34■■□□□ 1.33
SSBP4-207ENST00000600244 RSBN1LQ6PCB5 846 aaPredicted RBP23.34■■□□□ 1.33
SSBP4-207ENST00000600244 MYOZ2Q9NPC6 264 aa23.34■■□□□ 1.33
SSBP4-207ENST00000600244 NUDCQ9Y266 331 aa23.34■■□□□ 1.33
SSBP4-207ENST00000600244 PTPN22Q9Y2R2 807 aa23.34■■□□□ 1.33
SSBP4-207ENST00000600244 ZC3H12CQ9C0D7 883 aaKnown RBP23.33■■□□□ 1.33
SSBP4-207ENST00000600244 CENPFP49454 3210 aa23.33■■□□□ 1.33
SSBP4-207ENST00000600244 PTPN12Q05209 780 aaKnown RBP23.32■■□□□ 1.32
SSBP4-207ENST00000600244 TCIRG1Q13488 830 aa23.32■■□□□ 1.32
SSBP4-207ENST00000600244 SF3B3Q15393 1217 aaKnown RBP23.32■■□□□ 1.32
SSBP4-207ENST00000600244 CFAP53Q96M91 514 aa23.32■■□□□ 1.32
SSBP4-207ENST00000600244 BRCA2P51587 3418 aa23.31■■□□□ 1.32
SSBP4-207ENST00000600244 USP17L8P0C7I0 530 aa23.31■■□□□ 1.32
SSBP4-207ENST00000600244 TTLL12Q14166 644 aaPredicted RBP23.31■■□□□ 1.32
SSBP4-207ENST00000600244 PROSER3Q2NL68 480 aa23.31■■□□□ 1.32
SSBP4-207ENST00000600244 SPRYD7Q5W111 196 aa23.31■■□□□ 1.32
SSBP4-207ENST00000600244 SLC17A8Q8NDX2 589 aa23.31■■□□□ 1.32
SSBP4-207ENST00000600244 COL4A1P02462 1669 aa23.3■■□□□ 1.32
SSBP4-207ENST00000600244 H0YGN5 161 aa23.29■■□□□ 1.32
SSBP4-207ENST00000600244 ANXA1P04083 346 aa23.29■■□□□ 1.32
SSBP4-207ENST00000600244 CNGB1Q14028 1251 aaPredicted RBP23.29■■□□□ 1.32
SSBP4-207ENST00000600244 LDLRAD1Q5T700 205 aa23.29■■□□□ 1.32
SSBP4-207ENST00000600244 PODXL2Q9NZ53 605 aa23.29■■□□□ 1.32
SSBP4-207ENST00000600244 INHBEP58166 350 aa23.28■■□□□ 1.32
SSBP4-207ENST00000600244 NBPF9Q3BBW0 867 aa23.28■■□□□ 1.32
SSBP4-207ENST00000600244 IFNL1Q8IU54 200 aa23.28■■□□□ 1.32
SSBP4-207ENST00000600244 COPS6Q7L5N1 327 aa23.27■■□□□ 1.32
SSBP4-207ENST00000600244 ERO1AQ96HE7 468 aa23.27■■□□□ 1.32
SSBP4-207ENST00000600244 NF2P35240 595 aa23.26■■□□□ 1.31
SSBP4-207ENST00000600244 RPS8P62241 208 aaKnown RBP23.26■■□□□ 1.31
SSBP4-207ENST00000600244 MANSC4A6NHS7 340 aaPredicted RBP23.25■■□□□ 1.31
SSBP4-207ENST00000600244 G3V3G9 751 aa23.25■■□□□ 1.31
SSBP4-207ENST00000600244 EIF2S2P20042 333 aaKnown RBP23.25■■□□□ 1.31
SSBP4-207ENST00000600244 DCAF8Q5TAQ9 597 aa23.25■■□□□ 1.31
SSBP4-207ENST00000600244 ARMC9Q7Z3E5 817 aa23.25■■□□□ 1.31
SSBP4-207ENST00000600244 CD99L2Q8TCZ2 262 aa23.25■■□□□ 1.31
SSBP4-207ENST00000600244 TMEM106CQ9BVX2 250 aa23.25■■□□□ 1.31
SSBP4-207ENST00000600244 CUL9Q8IWT3 2517 aa23.25■■□□□ 1.31
SSBP4-207ENST00000600244 PSME4Q14997 1843 aa23.24■■□□□ 1.31
SSBP4-207ENST00000600244 XAGE3Q8WTP9 111 aa23.24■■□□□ 1.31
SSBP4-207ENST00000600244 ZNF333Q96JL9 665 aa23.24■■□□□ 1.31
SSBP4-207ENST00000600244 IGF2BP3O00425 579 aaKnown RBP eCLIP23.23■■□□□ 1.31
SSBP4-207ENST00000600244 UFL1O94874 794 aa23.23■■□□□ 1.31
SSBP4-207ENST00000600244 CAP1Q01518 475 aa23.23■■□□□ 1.31
SSBP4-207ENST00000600244 ZNF428Q96B54 188 aa23.23■■□□□ 1.31
SSBP4-207ENST00000600244 EFCC1Q9HA90 598 aa23.23■■□□□ 1.31
SSBP4-207ENST00000600244 A0A0C4DFX4 3053 aa23.22■■□□□ 1.31
SSBP4-207ENST00000600244 AIMP1Q12904 312 aaKnown RBP23.22■■□□□ 1.31
SSBP4-207ENST00000600244 FAM89AQ96GI7 184 aa23.22■■□□□ 1.31
SSBP4-207ENST00000600244 USP17L3A6NCW0 530 aa23.21■■□□□ 1.31
SSBP4-207ENST00000600244 USP17L4A6NCW7 530 aa23.21■■□□□ 1.31
SSBP4-207ENST00000600244 WNT10BO00744 389 aa23.21■■□□□ 1.31
SSBP4-207ENST00000600244 CHRDL2Q6WN34 429 aa23.21■■□□□ 1.31
SSBP4-207ENST00000600244 USP17L1Q7RTZ2 530 aa23.21■■□□□ 1.31
SSBP4-207ENST00000600244 RBM27Q9P2N5 1060 aaKnown RBP23.21■■□□□ 1.31
SSBP4-207ENST00000600244 GGA1Q9UJY5 639 aa23.21■■□□□ 1.31
SSBP4-207ENST00000600244 DLG5Q8TDM6 1919 aa23.21■■□□□ 1.31
SSBP4-207ENST00000600244 PRKG1Q13976 671 aa23.2■■□□□ 1.3
SSBP4-207ENST00000600244 PODNQ7Z5L7 613 aa23.19■■□□□ 1.3
SSBP4-207ENST00000600244 ISCA1Q9BUE6 129 aa23.19■■□□□ 1.3
SSBP4-207ENST00000600244 ANGEL1Q9UNK9 670 aaKnown RBP23.19■■□□□ 1.3
SSBP4-207ENST00000600244 ZBTB48P10074 688 aaPredicted RBP23.18■■□□□ 1.3
SSBP4-207ENST00000600244 CRHR2Q13324 411 aa23.18■■□□□ 1.3
SSBP4-207ENST00000600244 SLC10A4Q96EP9 437 aa23.18■■□□□ 1.3
SSBP4-207ENST00000600244 ANKIB1Q9P2G1 1089 aa23.18■■□□□ 1.3
SSBP4-207ENST00000600244 RANBP2P49792 3224 aaKnown RBP23.18■■□□□ 1.3
SSBP4-207ENST00000600244 SP3Q02447 781 aa23.17■■□□□ 1.3
SSBP4-207ENST00000600244 MAP3K11Q16584 847 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms