RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 EAF2Q96CJ1 260 aaPredicted RBP18.67■□□□□ 0.58
TRIM28-209ENST00000597423 TMX4Q9H1E5 349 aaPredicted RBP18.67■□□□□ 0.58
TRIM28-209ENST00000597423 ECHDC1Q9NTX5 307 aa18.67■□□□□ 0.58
TRIM28-209ENST00000597423 H0YIN7 160 aa18.66■□□□□ 0.58
TRIM28-209ENST00000597423 BMP2KLQ5H9B9 411 aa18.66■□□□□ 0.58
TRIM28-209ENST00000597423 GORABQ5T7V8 394 aa18.66■□□□□ 0.58
TRIM28-209ENST00000597423 CCDC8Q9H0W5 538 aaPredicted RBP18.66■□□□□ 0.58
TRIM28-209ENST00000597423 TUBGCP6Q96RT7 1819 aa18.65■□□□□ 0.58
TRIM28-209ENST00000597423 GLRX3O76003 335 aaKnown RBP18.65■□□□□ 0.58
TRIM28-209ENST00000597423 PUM3Q15397 648 aaKnown RBP18.65■□□□□ 0.58
TRIM28-209ENST00000597423 ATP2B3Q16720 1220 aa18.65■□□□□ 0.58
TRIM28-209ENST00000597423 OTUD7AQ8TE49 926 aaPredicted RBP18.65■□□□□ 0.58
TRIM28-209ENST00000597423 CELF1Q92879 486 aaKnown RBP18.65■□□□□ 0.58
TRIM28-209ENST00000597423 MASTLQ96GX5 879 aa18.65■□□□□ 0.58
TRIM28-209ENST00000597423 PDGFDQ9GZP0 370 aaPredicted RBP18.65■□□□□ 0.58
TRIM28-209ENST00000597423 LAMB2P55268 1798 aa18.65■□□□□ 0.58
TRIM28-209ENST00000597423 MYH3P11055 1940 aa18.64■□□□□ 0.58
TRIM28-209ENST00000597423 DDX60Q8IY21 1712 aaKnown RBP18.64■□□□□ 0.57
TRIM28-209ENST00000597423 EIF5BO60841 1220 aaKnown RBP18.64■□□□□ 0.57
TRIM28-209ENST00000597423 CCDC158Q5M9N0 1113 aa18.64■□□□□ 0.57
TRIM28-209ENST00000597423 TTC22Q5TAA0 569 aa18.64■□□□□ 0.57
TRIM28-209ENST00000597423 C2CD5Q86YS7 1000 aa18.64■□□□□ 0.57
TRIM28-209ENST00000597423 LPIN2Q92539 896 aa18.64■□□□□ 0.57
TRIM28-209ENST00000597423 SALL3Q9BXA9 1300 aa18.64■□□□□ 0.57
TRIM28-209ENST00000597423 A0A1B0GUL7 405 aa18.63■□□□□ 0.57
TRIM28-209ENST00000597423 ZBTB7AO95365 584 aa18.63■□□□□ 0.57
TRIM28-209ENST00000597423 IFIT1P09914 478 aaKnown RBP18.63■□□□□ 0.57
TRIM28-209ENST00000597423 SRGNP10124 158 aa18.63■□□□□ 0.57
TRIM28-209ENST00000597423 SLC5A1P13866 664 aa18.63■□□□□ 0.57
TRIM28-209ENST00000597423 TIMM10P62072 90 aa18.63■□□□□ 0.57
TRIM28-209ENST00000597423 CHRNDQ07001 517 aa18.63■□□□□ 0.57
TRIM28-209ENST00000597423 STYK1Q6J9G0 422 aa18.63■□□□□ 0.57
TRIM28-209ENST00000597423 MINPP1Q9UNW1 487 aa18.63■□□□□ 0.57
TRIM28-209ENST00000597423 ILDR2Q71H61 639 aa18.62■□□□□ 0.57
TRIM28-209ENST00000597423 KCNJ4P48050 445 aa18.61■□□□□ 0.57
TRIM28-209ENST00000597423 UBE4AQ14139 1066 aa18.61■□□□□ 0.57
TRIM28-209ENST00000597423 VGLL2Q8N8G2 317 aa18.61■□□□□ 0.57
TRIM28-209ENST00000597423 CNKSR1Q969H4 720 aa18.61■□□□□ 0.57
TRIM28-209ENST00000597423 ZNF622Q969S3 477 aaKnown RBP eCLIP18.61■□□□□ 0.57
TRIM28-209ENST00000597423 ATF5Q9Y2D1 282 aaPredicted RBP18.61■□□□□ 0.57
TRIM28-209ENST00000597423 ATP5JP18859 108 aa18.6■□□□□ 0.57
TRIM28-209ENST00000597423 CASC1Q6TDU7 716 aa18.6■□□□□ 0.57
TRIM28-209ENST00000597423 HELBQ8NG08 1087 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-209ENST00000597423 XAGE2Q96GT9 111 aa18.6■□□□□ 0.57
TRIM28-209ENST00000597423 DBNDD2Q9BQY9 259 aa18.6■□□□□ 0.57
TRIM28-209ENST00000597423 DBNLQ9UJU6 430 aaKnown RBP18.6■□□□□ 0.57
TRIM28-209ENST00000597423 TRIM6-TRIM34B2RNG4 842 aa18.59■□□□□ 0.57
TRIM28-209ENST00000597423 TAF5LO75529 589 aa18.59■□□□□ 0.57
TRIM28-209ENST00000597423 SP8Q8IXZ3 490 aa18.59■□□□□ 0.57
TRIM28-209ENST00000597423 ANKIB1Q9P2G1 1089 aa18.59■□□□□ 0.57
TRIM28-209ENST00000597423 LEMD3Q9Y2U8 911 aa18.59■□□□□ 0.57
TRIM28-209ENST00000597423 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-209ENST00000597423 PSDA5PKW4 1024 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-209ENST00000597423 PPEF1O14829 653 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-209ENST00000597423 UQCRFS1P1P0C7P4 283 aa18.58■□□□□ 0.56
TRIM28-209ENST00000597423 FGFR2P21802 821 aa18.58■□□□□ 0.56
TRIM28-209ENST00000597423 TTC39AQ5SRH9 613 aa18.58■□□□□ 0.56
TRIM28-209ENST00000597423 CNTROBQ8N137 903 aa18.58■□□□□ 0.56
TRIM28-209ENST00000597423 PI4K2BQ8TCG2 481 aa18.58■□□□□ 0.56
TRIM28-209ENST00000597423 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.58■□□□□ 0.56
TRIM28-209ENST00000597423 NRXN2Q9P2S2 1712 aa18.57■□□□□ 0.56
TRIM28-209ENST00000597423 TGFB2P61812 414 aa18.57■□□□□ 0.56
TRIM28-209ENST00000597423 CAVIN4Q5BKX8 364 aa18.57■□□□□ 0.56
TRIM28-209ENST00000597423 GNL3LQ9NVN8 582 aaKnown RBP18.57■□□□□ 0.56
TRIM28-209ENST00000597423 TLR7Q9NYK1 1049 aaKnown RBP18.57■□□□□ 0.56
TRIM28-209ENST00000597423 ATP6V0A2Q9Y487 856 aa18.57■□□□□ 0.56
TRIM28-209ENST00000597423 ZNF609O15014 1411 aa18.57■□□□□ 0.56
TRIM28-209ENST00000597423 XDHP47989 1333 aa18.56■□□□□ 0.56
TRIM28-209ENST00000597423 SDSP20132 328 aa18.56■□□□□ 0.56
TRIM28-209ENST00000597423 ATP2B4P23634 1241 aa18.56■□□□□ 0.56
TRIM28-209ENST00000597423 TSHZ3Q63HK5 1081 aa18.56■□□□□ 0.56
TRIM28-209ENST00000597423 RILPL2Q969X0 211 aa18.56■□□□□ 0.56
TRIM28-209ENST00000597423 EVI5LQ96CN4 794 aa18.56■□□□□ 0.56
TRIM28-209ENST00000597423 ZNF512BQ96KM6 892 aaPredicted RBP18.56■□□□□ 0.56
TRIM28-209ENST00000597423 CDC45O75419 566 aa18.55■□□□□ 0.56
TRIM28-209ENST00000597423 GSPT1P15170 499 aaKnown RBP18.55■□□□□ 0.56
TRIM28-209ENST00000597423 GRIPAP1Q4V328 841 aa18.55■□□□□ 0.56
TRIM28-209ENST00000597423 CC2D2BQ6DHV5 1058 aa18.55■□□□□ 0.56
TRIM28-209ENST00000597423 TICAM2Q86XR7 235 aa18.55■□□□□ 0.56
TRIM28-209ENST00000597423 VPS37DQ86XT2 251 aa18.55■□□□□ 0.56
TRIM28-209ENST00000597423 BOLA2Q9H3K6 86 aa18.55■□□□□ 0.56
TRIM28-209ENST00000597423 ZNF804BA4D1E1 1349 aa18.54■□□□□ 0.56
TRIM28-209ENST00000597423 LRP5O75197 1615 aa18.54■□□□□ 0.56
TRIM28-209ENST00000597423 HAUS7Q99871 368 aa18.54■□□□□ 0.56
TRIM28-209ENST00000597423 BACH2Q9BYV9 841 aa18.54■□□□□ 0.56
TRIM28-209ENST00000597423 SPON1Q9HCB6 807 aa18.54■□□□□ 0.56
TRIM28-209ENST00000597423 GGA1Q9UJY5 639 aa18.54■□□□□ 0.56
TRIM28-209ENST00000597423 NSFL1CQ9UNZ2 370 aaKnown RBP18.54■□□□□ 0.56
TRIM28-209ENST00000597423 CD2APQ9Y5K6 639 aa18.54■□□□□ 0.56
TRIM28-209ENST00000597423 HIP1O00291 1037 aa18.53■□□□□ 0.56
TRIM28-209ENST00000597423 ADORA1P30542 326 aa18.53■□□□□ 0.56
TRIM28-209ENST00000597423 LRRFIP1Q32MZ4 808 aaKnown RBP18.53■□□□□ 0.56
TRIM28-209ENST00000597423 C10orf71Q711Q0 1435 aa18.53■□□□□ 0.56
TRIM28-209ENST00000597423 PODXL2Q9NZ53 605 aa18.53■□□□□ 0.56
TRIM28-209ENST00000597423 TNRC6CQ9HCJ0 1690 aaKnown RBP18.53■□□□□ 0.56
TRIM28-209ENST00000597423 CHRNA5P30532 468 aa18.52■□□□□ 0.56
TRIM28-209ENST00000597423 CCDC102BQ68D86 513 aa18.52■□□□□ 0.56
TRIM28-209ENST00000597423 MPNDQ8N594 471 aa18.52■□□□□ 0.56
TRIM28-209ENST00000597423 TTLL6Q8N841 843 aa18.52■□□□□ 0.56
TRIM28-209ENST00000597423 GPSM2P81274 684 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 608.7 ms