RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 NIM1KQ8IY84 436 aa18.87■□□□□ 0.61
UPF1-202ENST00000594243 CLUAP1Q96AJ1 413 aa18.87■□□□□ 0.61
UPF1-202ENST00000594243 POLLQ9UGP5 575 aa18.87■□□□□ 0.61
UPF1-202ENST00000594243 GGA1Q9UJY5 639 aa18.87■□□□□ 0.61
UPF1-202ENST00000594243 ATP2B4P23634 1241 aa18.86■□□□□ 0.61
UPF1-202ENST00000594243 EIF6P56537 245 aaKnown RBP18.86■□□□□ 0.61
UPF1-202ENST00000594243 TBC1D16Q8TBP0 767 aa18.86■□□□□ 0.61
UPF1-202ENST00000594243 ANKRD2Q9GZV1 360 aa18.86■□□□□ 0.61
UPF1-202ENST00000594243 TIAM2Q8IVF5 1701 aa18.86■□□□□ 0.61
UPF1-202ENST00000594243 GNAI3P08754 354 aa18.85■□□□□ 0.61
UPF1-202ENST00000594243 FTSJ3Q8IY81 847 aaKnown RBP18.85■□□□□ 0.61
UPF1-202ENST00000594243 YTHDC1Q96MU7 727 aaKnown RBP18.85■□□□□ 0.61
UPF1-202ENST00000594243 ZC3H12CQ9C0D7 883 aaKnown RBP18.85■□□□□ 0.61
UPF1-202ENST00000594243 RRAGCQ9HB90 399 aa18.85■□□□□ 0.61
UPF1-202ENST00000594243 RCAN3Q9UKA8 241 aa18.85■□□□□ 0.61
UPF1-202ENST00000594243 UFL1O94874 794 aa18.84■□□□□ 0.61
UPF1-202ENST00000594243 MS4A1P11836 297 aa18.84■□□□□ 0.61
UPF1-202ENST00000594243 LDHAL6AQ6ZMR3 332 aa18.84■□□□□ 0.61
UPF1-202ENST00000594243 DZIP1LQ8IYY4 767 aaKnown RBP18.84■□□□□ 0.61
UPF1-202ENST00000594243 ZNRF3Q9ULT6 936 aa18.84■□□□□ 0.61
UPF1-202ENST00000594243 RIMBP2O15034 1052 aa18.83■□□□□ 0.6
UPF1-202ENST00000594243 DDNO94850 711 aaPredicted RBP18.83■□□□□ 0.6
UPF1-202ENST00000594243 ANKRD44Q8N8A2 993 aa18.83■□□□□ 0.6
UPF1-202ENST00000594243 NMRK2Q9NPI5 230 aa18.83■□□□□ 0.6
UPF1-202ENST00000594243 CNNM1Q9NRU3 951 aa18.83■□□□□ 0.6
UPF1-202ENST00000594243 TNNQ9UQP3 1299 aa18.83■□□□□ 0.6
UPF1-202ENST00000594243 LEMD3Q9Y2U8 911 aa18.83■□□□□ 0.6
UPF1-202ENST00000594243 G3V3G9 751 aa18.82■□□□□ 0.6
UPF1-202ENST00000594243 VEGFAP15692 232 aaPredicted RBP18.82■□□□□ 0.6
UPF1-202ENST00000594243 DCAF8Q5TAQ9 597 aa18.82■□□□□ 0.6
UPF1-202ENST00000594243 GPC2Q8N158 579 aa18.82■□□□□ 0.6
UPF1-202ENST00000594243 TMEM57Q8N5G2 664 aa18.82■□□□□ 0.6
UPF1-202ENST00000594243 ZNF594Q96JF6 807 aaPredicted RBP18.82■□□□□ 0.6
UPF1-202ENST00000594243 MEIS3Q99687 375 aa18.82■□□□□ 0.6
UPF1-202ENST00000594243 DUOX1Q9NRD9 1551 aa18.81■□□□□ 0.6
UPF1-202ENST00000594243 KIF3CO14782 793 aa18.81■□□□□ 0.6
UPF1-202ENST00000594243 CHRNDQ07001 517 aa18.81■□□□□ 0.6
UPF1-202ENST00000594243 C16orf71Q8IYS4 520 aaPredicted RBP18.81■□□□□ 0.6
UPF1-202ENST00000594243 CEP350Q5VT06 3117 aa18.81■□□□□ 0.6
UPF1-202ENST00000594243 ZNF541Q9H0D2 1346 aa18.8■□□□□ 0.6
UPF1-202ENST00000594243 LRRFIP2Q9Y608 721 aaKnown RBP18.8■□□□□ 0.6
UPF1-202ENST00000594243 IQCA1LA6NCM1 817 aa18.79■□□□□ 0.6
UPF1-202ENST00000594243 KCNJ4P48050 445 aa18.79■□□□□ 0.6
UPF1-202ENST00000594243 TNIP1Q15025 636 aa18.79■□□□□ 0.6
UPF1-202ENST00000594243 L3MBTL3Q96JM7 780 aaPredicted RBP18.79■□□□□ 0.6
UPF1-202ENST00000594243 GPR101Q96P66 508 aaPredicted RBP18.79■□□□□ 0.6
UPF1-202ENST00000594243 GJA3Q9Y6H8 435 aa18.79■□□□□ 0.6
UPF1-202ENST00000594243 LTBP1Q14766 1721 aa18.79■□□□□ 0.6
UPF1-202ENST00000594243 COL4A5P29400 1685 aa18.79■□□□□ 0.6
UPF1-202ENST00000594243 ZNF804BA4D1E1 1349 aa18.78■□□□□ 0.6
UPF1-202ENST00000594243 TOMM70O94826 608 aa18.78■□□□□ 0.6
UPF1-202ENST00000594243 GNAI2P04899 355 aa18.78■□□□□ 0.6
UPF1-202ENST00000594243 CXCL9Q07325 125 aa18.78■□□□□ 0.6
UPF1-202ENST00000594243 DOK7Q18PE1 504 aa18.78■□□□□ 0.6
UPF1-202ENST00000594243 CIAPIN1Q6FI81 312 aa18.78■□□□□ 0.6
UPF1-202ENST00000594243 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.78■□□□□ 0.6
UPF1-202ENST00000594243 DBNDD1Q9H9R9 158 aa18.78■□□□□ 0.6
UPF1-202ENST00000594243 SPEF2Q9C093 1822 aa18.77■□□□□ 0.6
UPF1-202ENST00000594243 POTECB2RU33 542 aa18.77■□□□□ 0.6
UPF1-202ENST00000594243 ECE2O60344 883 aa18.77■□□□□ 0.6
UPF1-202ENST00000594243 TAF5LO75529 589 aa18.77■□□□□ 0.6
UPF1-202ENST00000594243 ITPRIPQ8IWB1 547 aa18.77■□□□□ 0.6
UPF1-202ENST00000594243 RIPOR2Q9Y4F9 1068 aa18.77■□□□□ 0.6
UPF1-202ENST00000594243 MED23Q9ULK4 1368 aa18.77■□□□□ 0.6
UPF1-202ENST00000594243 WDR90Q96KV7 1748 aa18.77■□□□□ 0.59
UPF1-202ENST00000594243 MROH5Q6ZUA9 1318 aa18.76■□□□□ 0.59
UPF1-202ENST00000594243 YDJCA8MPS7 323 aa18.76■□□□□ 0.59
UPF1-202ENST00000594243 PLIN1O60240 522 aa18.76■□□□□ 0.59
UPF1-202ENST00000594243 RLBP1P12271 317 aa18.76■□□□□ 0.59
UPF1-202ENST00000594243 PODNQ7Z5L7 613 aa18.76■□□□□ 0.59
UPF1-202ENST00000594243 HELBQ8NG08 1087 aaPredicted RBP18.76■□□□□ 0.59
UPF1-202ENST00000594243 PUS3Q9BZE2 481 aaKnown RBP18.76■□□□□ 0.59
UPF1-202ENST00000594243 WTIPA6NIX2 430 aaPredicted RBP18.75■□□□□ 0.59
UPF1-202ENST00000594243 ZBTB7BO15156 539 aaPredicted RBP18.75■□□□□ 0.59
UPF1-202ENST00000594243 RAD17O75943 681 aa18.75■□□□□ 0.59
UPF1-202ENST00000594243 RFX5P48382 616 aaPredicted RBP18.75■□□□□ 0.59
UPF1-202ENST00000594243 HACL1Q9UJ83 578 aa18.75■□□□□ 0.59
UPF1-202ENST00000594243 FBXO3Q9UK99 471 aa18.75■□□□□ 0.59
UPF1-202ENST00000594243 LMOD1P29536 600 aaPredicted RBP18.74■□□□□ 0.59
UPF1-202ENST00000594243 PTPN12Q05209 780 aaKnown RBP18.74■□□□□ 0.59
UPF1-202ENST00000594243 LRRC24Q50LG9 513 aa18.74■□□□□ 0.59
UPF1-202ENST00000594243 KLHDC4Q8TBB5 520 aa18.74■□□□□ 0.59
UPF1-202ENST00000594243 PANK1Q8TE04 598 aa18.74■□□□□ 0.59
UPF1-202ENST00000594243 COA1Q9GZY4 146 aa18.74■□□□□ 0.59
UPF1-202ENST00000594243 MTX1Q13505 466 aa18.73■□□□□ 0.59
UPF1-202ENST00000594243 UBE4AQ14139 1066 aa18.73■□□□□ 0.59
UPF1-202ENST00000594243 METTL24Q5JXM2 366 aa18.73■□□□□ 0.59
UPF1-202ENST00000594243 C15orf52Q6ZUT6 534 aaKnown RBP18.73■□□□□ 0.59
UPF1-202ENST00000594243 EYA2O00167 538 aa18.72■□□□□ 0.59
UPF1-202ENST00000594243 SRGAP3O43295 1099 aa18.72■□□□□ 0.59
UPF1-202ENST00000594243 PNMA8AQ86V59 439 aaPredicted RBP18.72■□□□□ 0.59
UPF1-202ENST00000594243 RBM46Q8TBY0 533 aaKnown RBP18.72■□□□□ 0.59
UPF1-202ENST00000594243 CHMP4BQ9H444 224 aaKnown RBP18.72■□□□□ 0.59
UPF1-202ENST00000594243 TAF1DQ9H5J8 278 aaPredicted RBP18.72■□□□□ 0.59
UPF1-202ENST00000594243 SNAP23O00161 211 aa18.71■□□□□ 0.59
UPF1-202ENST00000594243 PSMD14O00487 310 aa18.71■□□□□ 0.59
UPF1-202ENST00000594243 CIAO1O76071 339 aa18.71■□□□□ 0.59
UPF1-202ENST00000594243 PDE8BO95263 885 aa18.71■□□□□ 0.59
UPF1-202ENST00000594243 EPHX2P34913 555 aa18.71■□□□□ 0.59
UPF1-202ENST00000594243 SCNN1DP51172 638 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms