RNA–Protein interactions for RNA: ENST00000589007.5

RETREG3-207, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 3

Gene RETREG3, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-207ENST00000589007 BBOX1O75936 387 aa11.22□□□□□ -0.61
RETREG3-207ENST00000589007 VIL1P09327 827 aaKnown RBP11.22□□□□□ -0.61
RETREG3-207ENST00000589007 HCLS1P14317 486 aaPredicted RBP11.22□□□□□ -0.61
RETREG3-207ENST00000589007 EIF4A1P60842 406 aaKnown RBP11.22□□□□□ -0.61
RETREG3-207ENST00000589007 PARP10Q53GL7 1025 aa11.22□□□□□ -0.61
RETREG3-207ENST00000589007 ANGEL2Q5VTE6 544 aaKnown RBP11.22□□□□□ -0.61
RETREG3-207ENST00000589007 CELF1Q92879 486 aaKnown RBP11.22□□□□□ -0.61
RETREG3-207ENST00000589007 DCPSQ96C86 337 aaKnown RBP11.22□□□□□ -0.61
RETREG3-207ENST00000589007 NLRP3Q96P20 1036 aa11.22□□□□□ -0.61
RETREG3-207ENST00000589007 HDAC9Q9UKV0 1011 aa11.22□□□□□ -0.61
RETREG3-207ENST00000589007 FKTNO75072 461 aa11.21□□□□□ -0.61
RETREG3-207ENST00000589007 GPSM2P81274 684 aa11.21□□□□□ -0.61
RETREG3-207ENST00000589007 RBM26Q5T8P6 1007 aaKnown RBP11.21□□□□□ -0.61
RETREG3-207ENST00000589007 NLRP10Q86W26 655 aa11.21□□□□□ -0.61
RETREG3-207ENST00000589007 ERBB4Q15303 1308 aa11.2□□□□□ -0.62
RETREG3-207ENST00000589007 UBE2Q2LH0YL09 131 aa11.2□□□□□ -0.62
RETREG3-207ENST00000589007 DLL1O00548 723 aa11.2□□□□□ -0.62
RETREG3-207ENST00000589007 MYL6BP14649 208 aa11.2□□□□□ -0.62
RETREG3-207ENST00000589007 PRAMEF18Q5VWM3 479 aa11.2□□□□□ -0.62
RETREG3-207ENST00000589007 KIF6Q6ZMV9 814 aa11.2□□□□□ -0.62
RETREG3-207ENST00000589007 SULF1Q8IWU6 871 aa11.2□□□□□ -0.62
RETREG3-207ENST00000589007 THUMPD2Q9BTF0 503 aaKnown RBP11.2□□□□□ -0.62
RETREG3-207ENST00000589007 MYH3P11055 1940 aa11.19□□□□□ -0.62
RETREG3-207ENST00000589007 IGF2BP3O00425 579 aaKnown RBP eCLIP11.19□□□□□ -0.62
RETREG3-207ENST00000589007 SCARF1Q14162 830 aa11.19□□□□□ -0.62
RETREG3-207ENST00000589007 DOK7Q18PE1 504 aa11.19□□□□□ -0.62
RETREG3-207ENST00000589007 CC2D1BQ5T0F9 858 aaKnown RBP11.19□□□□□ -0.62
RETREG3-207ENST00000589007 PPP1R42Q7Z4L9 355 aa11.19□□□□□ -0.62
RETREG3-207ENST00000589007 UTP14AQ9BVJ6 771 aaKnown RBP11.19□□□□□ -0.62
RETREG3-207ENST00000589007 RRP7AQ9Y3A4 280 aaKnown RBP11.19□□□□□ -0.62
RETREG3-207ENST00000589007 MUC3AQ02505 3323 aa11.19□□□□□ -0.62
RETREG3-207ENST00000589007 ARAP2Q8WZ64 1704 aa11.18□□□□□ -0.62
RETREG3-207ENST00000589007 HTATSF1O43719 755 aaKnown RBP11.18□□□□□ -0.62
RETREG3-207ENST00000589007 ANXA1P04083 346 aa11.18□□□□□ -0.62
RETREG3-207ENST00000589007 EIF4G2P78344 907 aaKnown RBP eCLIP11.18□□□□□ -0.62
RETREG3-207ENST00000589007 TAF7Q15545 349 aaPredicted RBP11.18□□□□□ -0.62
RETREG3-207ENST00000589007 WASHC4Q2M389 1173 aa11.18□□□□□ -0.62
RETREG3-207ENST00000589007 TBC1D16Q8TBP0 767 aa11.18□□□□□ -0.62
RETREG3-207ENST00000589007 ZNF333Q96JL9 665 aa11.18□□□□□ -0.62
RETREG3-207ENST00000589007 PTPN22Q9Y2R2 807 aa11.18□□□□□ -0.62
RETREG3-207ENST00000589007 H0YGN5 161 aa11.17□□□□□ -0.62
RETREG3-207ENST00000589007 RIMBP2O15034 1052 aa11.17□□□□□ -0.62
RETREG3-207ENST00000589007 PTPN12Q05209 780 aaKnown RBP11.17□□□□□ -0.62
RETREG3-207ENST00000589007 MKRN3Q13064 507 aaKnown RBP11.17□□□□□ -0.62
RETREG3-207ENST00000589007 LDLRAD1Q5T700 205 aa11.17□□□□□ -0.62
RETREG3-207ENST00000589007 INTS3Q68E01 1043 aaKnown RBP11.17□□□□□ -0.62
RETREG3-207ENST00000589007 TIMELESSQ9UNS1 1208 aa11.17□□□□□ -0.62
RETREG3-207ENST00000589007 TRIM17Q9Y577 477 aa11.17□□□□□ -0.62
RETREG3-207ENST00000589007 PRUNE2Q8WUY3 3088 aa11.17□□□□□ -0.62
RETREG3-207ENST00000589007 NBPF9Q3BBW0 867 aa11.16□□□□□ -0.62
RETREG3-207ENST00000589007 SPRYD7Q5W111 196 aa11.16□□□□□ -0.62
RETREG3-207ENST00000589007 RSBN1LQ6PCB5 846 aaPredicted RBP11.16□□□□□ -0.62
RETREG3-207ENST00000589007 TMC4Q7Z404 712 aa11.16□□□□□ -0.62
RETREG3-207ENST00000589007 SHISA4Q96DD7 197 aa11.16□□□□□ -0.62
RETREG3-207ENST00000589007 MYOZ2Q9NPC6 264 aa11.16□□□□□ -0.62
RETREG3-207ENST00000589007 PODXL2Q9NZ53 605 aa11.16□□□□□ -0.62
RETREG3-207ENST00000589007 RBM27Q9P2N5 1060 aaKnown RBP11.16□□□□□ -0.62
RETREG3-207ENST00000589007 FZD1Q9UP38 647 aa11.16□□□□□ -0.62
RETREG3-207ENST00000589007 WTIPA6NIX2 430 aaPredicted RBP11.15□□□□□ -0.62
RETREG3-207ENST00000589007 GJA5P36382 358 aa11.15□□□□□ -0.62
RETREG3-207ENST00000589007 SF3B3Q15393 1217 aaKnown RBP11.15□□□□□ -0.62
RETREG3-207ENST00000589007 DDX46Q7L014 1031 aaKnown RBP11.15□□□□□ -0.62
RETREG3-207ENST00000589007 CD99L2Q8TCZ2 262 aa11.15□□□□□ -0.62
RETREG3-207ENST00000589007 ZBED3Q96IU2 234 aaPredicted RBP11.15□□□□□ -0.62
RETREG3-207ENST00000589007 SH3TC1Q8TE82 1336 aa11.14□□□□□ -0.63
RETREG3-207ENST00000589007 LAMA2P24043 3122 aaKnown RBP11.14□□□□□ -0.63
RETREG3-207ENST00000589007 COL1A1P02452 1464 aaPredicted RBP11.14□□□□□ -0.63
RETREG3-207ENST00000589007 SOX1O00570 391 aaPredicted RBP11.14□□□□□ -0.63
RETREG3-207ENST00000589007 CHRDL2Q6WN34 429 aa11.14□□□□□ -0.63
RETREG3-207ENST00000589007 UBE2Q1Q7Z7E8 422 aa11.14□□□□□ -0.63
RETREG3-207ENST00000589007 IFNL1Q8IU54 200 aa11.14□□□□□ -0.63
RETREG3-207ENST00000589007 AGBL3Q8NEM8 1001 aa11.14□□□□□ -0.63
RETREG3-207ENST00000589007 ZNF428Q96B54 188 aa11.14□□□□□ -0.63
RETREG3-207ENST00000589007 NSFL1CQ9UNZ2 370 aaKnown RBP11.14□□□□□ -0.63
RETREG3-207ENST00000589007 SREBF2Q12772 1141 aa11.13□□□□□ -0.63
RETREG3-207ENST00000589007 PLEKHF1Q96S99 279 aa11.13□□□□□ -0.63
RETREG3-207ENST00000589007 PTPN18Q99952 460 aa11.13□□□□□ -0.63
RETREG3-207ENST00000589007 MGAMO43451 1857 aa11.12□□□□□ -0.63
RETREG3-207ENST00000589007 WNT10BO00744 389 aa11.12□□□□□ -0.63
RETREG3-207ENST00000589007 CRHR2Q13324 411 aa11.12□□□□□ -0.63
RETREG3-207ENST00000589007 TCIRG1Q13488 830 aa11.12□□□□□ -0.63
RETREG3-207ENST00000589007 MAP3K11Q16584 847 aa11.12□□□□□ -0.63
RETREG3-207ENST00000589007 RTF1Q92541 710 aaKnown RBP11.12□□□□□ -0.63
RETREG3-207ENST00000589007 CLMNQ96JQ2 1002 aa11.12□□□□□ -0.63
RETREG3-207ENST00000589007 ISCA1Q9BUE6 129 aa11.12□□□□□ -0.63
RETREG3-207ENST00000589007 MXD3Q9BW11 206 aa11.12□□□□□ -0.63
RETREG3-207ENST00000589007 CDH23Q9H251 3354 aa11.12□□□□□ -0.63
RETREG3-207ENST00000589007 AOX1Q06278 1338 aa11.11□□□□□ -0.63
RETREG3-207ENST00000589007 C6orf229H3BNL8 230 aa11.11□□□□□ -0.63
RETREG3-207ENST00000589007 DACT2Q5SW24 774 aa11.11□□□□□ -0.63
RETREG3-207ENST00000589007 NECTIN2Q92692 538 aa11.11□□□□□ -0.63
RETREG3-207ENST00000589007 WNK4Q96J92 1243 aa11.11□□□□□ -0.63
RETREG3-207ENST00000589007 TMX4Q9H1E5 349 aaPredicted RBP11.11□□□□□ -0.63
RETREG3-207ENST00000589007 TESPA1A2RU30 521 aaPredicted RBP11.1□□□□□ -0.63
RETREG3-207ENST00000589007 USP17L8P0C7I0 530 aa11.1□□□□□ -0.63
RETREG3-207ENST00000589007 COPS6Q7L5N1 327 aa11.1□□□□□ -0.63
RETREG3-207ENST00000589007 SLC17A8Q8NDX2 589 aa11.1□□□□□ -0.63
RETREG3-207ENST00000589007 XAGE3Q8WTP9 111 aa11.1□□□□□ -0.63
RETREG3-207ENST00000589007 EYA3Q99504 573 aa11.1□□□□□ -0.63
RETREG3-207ENST00000589007 SEC31BQ9NQW1 1179 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms