RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 TTC5Q8N0Z6 440 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 ACSBG1Q96GR2 724 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 UNC93B1Q9H1C4 597 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 MBIPQ9NS73 344 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 RGS17Q9UGC6 210 aaPredicted RBP6.84□□□□□ -1.31
LIG3-210ENST00000588109 MRC1P22897 1456 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 DOT1LQ8TEK3 1739 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 TOGARAM1Q9Y4F4 1720 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 CHL1O00533 1208 aa6.83□□□□□ -1.32
LIG3-210ENST00000588109 USP17L8P0C7I0 530 aa6.83□□□□□ -1.32
LIG3-210ENST00000588109 ZNF853P0CG23 659 aa6.83□□□□□ -1.32
LIG3-210ENST00000588109 EXOSC9Q06265 439 aaKnown RBP6.83□□□□□ -1.32
LIG3-210ENST00000588109 POTEAQ6S8J7 498 aa6.83□□□□□ -1.32
LIG3-210ENST00000588109 KRT27Q7Z3Y8 459 aa6.83□□□□□ -1.32
LIG3-210ENST00000588109 TRMT2AQ8IZ69 625 aaKnown RBP6.83□□□□□ -1.32
LIG3-210ENST00000588109 BABAM1Q9NWV8 329 aa6.83□□□□□ -1.32
LIG3-210ENST00000588109 SIPA1L3O60292 1781 aaPredicted RBP6.82□□□□□ -1.32
LIG3-210ENST00000588109 APBB1O00213 710 aa6.82□□□□□ -1.32
LIG3-210ENST00000588109 ELL2O00472 640 aaPredicted RBP6.82□□□□□ -1.32
LIG3-210ENST00000588109 WNT7BP56706 349 aa6.82□□□□□ -1.32
LIG3-210ENST00000588109 FAM182BQ5T319 152 aa6.82□□□□□ -1.32
LIG3-210ENST00000588109 LRRN4Q8WUT4 740 aa6.82□□□□□ -1.32
LIG3-210ENST00000588109 IRX2Q9BZI1 471 aaPredicted RBP6.82□□□□□ -1.32
LIG3-210ENST00000588109 MAP10Q9P2G4 905 aa6.82□□□□□ -1.32
LIG3-210ENST00000588109 BRWD3Q6RI45 1802 aa6.82□□□□□ -1.32
LIG3-210ENST00000588109 RGS12O14924 1447 aa6.82□□□□□ -1.32
LIG3-210ENST00000588109 KDM3BQ7LBC6 1761 aa6.82□□□□□ -1.32
LIG3-210ENST00000588109 ITGB4P16144 1822 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 SLC39A6Q13433 755 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 AGERQ15109 404 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 TWISTNBQ3B726 338 aaPredicted RBP6.81□□□□□ -1.32
LIG3-210ENST00000588109 LINC01559Q495D7 138 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 ZNF790Q6PG37 636 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 FAM196AQ6ZSG2 479 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 BANK1Q8NDB2 785 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 PIGBQ92521 554 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 BAP1Q92560 729 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 EMID1Q96A84 441 aaPredicted RBP6.81□□□□□ -1.32
LIG3-210ENST00000588109 RCAN3Q9UKA8 241 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 PDZRN3Q9UPQ7 1066 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 KAT6BQ8WYB5 2073 aa6.81□□□□□ -1.32
LIG3-210ENST00000588109 BCL9O00512 1426 aa6.8□□□□□ -1.32
LIG3-210ENST00000588109 KCNQ3O43525 872 aa6.8□□□□□ -1.32
LIG3-210ENST00000588109 GFRA3O60609 400 aa6.8□□□□□ -1.32
LIG3-210ENST00000588109 F12P00748 615 aaPredicted RBP6.8□□□□□ -1.32
LIG3-210ENST00000588109 CT47B1P0C2W7 299 aaPredicted RBP6.8□□□□□ -1.32
LIG3-210ENST00000588109 EIF4A1P60842 406 aaKnown RBP6.8□□□□□ -1.32
LIG3-210ENST00000588109 LAPTM4AQ15012 233 aa6.8□□□□□ -1.32
LIG3-210ENST00000588109 KRT24Q2M2I5 525 aa6.8□□□□□ -1.32
LIG3-210ENST00000588109 C8orf58Q8NAV2 365 aa6.8□□□□□ -1.32
LIG3-210ENST00000588109 FMNL2Q96PY5 1086 aa6.8□□□□□ -1.32
LIG3-210ENST00000588109 PRM3Q9NNZ6 103 aa6.8□□□□□ -1.32
LIG3-210ENST00000588109 NHSQ6T4R5 1651 aa6.8□□□□□ -1.32
LIG3-210ENST00000588109 PAPPAQ13219 1627 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 KCNQ2O43526 872 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 PTCD1O75127 700 aaKnown RBP6.79□□□□□ -1.32
LIG3-210ENST00000588109 CANXP27824 592 aaKnown RBP6.79□□□□□ -1.32
LIG3-210ENST00000588109 NR6A1Q15406 480 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 RC3H1Q5TC82 1133 aaKnown RBP6.79□□□□□ -1.32
LIG3-210ENST00000588109 NBPF14Q5TI25 921 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 CYP4X1Q8N118 509 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 TSPYL6Q8N831 410 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 EHBP1Q8NDI1 1231 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 SMARCC1Q92922 1105 aaPredicted RBP6.79□□□□□ -1.32
LIG3-210ENST00000588109 ZNF496Q96IT1 587 aaPredicted RBP6.79□□□□□ -1.32
LIG3-210ENST00000588109 CHMP4AQ9BY43 222 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 ATG3Q9NT62 314 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 SMC4Q9NTJ3 1288 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 ASAP1Q9ULH1 1129 aa6.79□□□□□ -1.32
LIG3-210ENST00000588109 SOS1Q07889 1333 aaPredicted RBP6.78□□□□□ -1.32
LIG3-210ENST00000588109 TTC24A2A3L6 582 aaPredicted RBP6.78□□□□□ -1.32
LIG3-210ENST00000588109 WNT7AO00755 349 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 TCERG1O14776 1098 aaKnown RBP6.78□□□□□ -1.32
LIG3-210ENST00000588109 VAMP4O75379 141 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 GIGYF1O75420 1035 aaPredicted RBP6.78□□□□□ -1.32
LIG3-210ENST00000588109 TRIM37O94972 964 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 SNRPA1P09661 255 aaKnown RBP6.78□□□□□ -1.32
LIG3-210ENST00000588109 EIF2S2P20042 333 aaKnown RBP6.78□□□□□ -1.32
LIG3-210ENST00000588109 HDGFL1Q5TGJ6 251 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 CCDC30Q5VVM6 783 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 ZNF428Q96B54 188 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 BCL2L13Q9BXK5 485 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 STK31Q9BXU1 1019 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 SUPT16HQ9Y5B9 1047 aaKnown RBP6.78□□□□□ -1.32
LIG3-210ENST00000588109 PALLDQ8WX93 1383 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 HEG1Q9ULI3 1381 aa6.78□□□□□ -1.32
LIG3-210ENST00000588109 UBR2Q8IWV8 1755 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 KCPQ6ZWJ8 1503 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 TNFRSF10AO00220 468 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 HOXB7P09629 217 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 RARSP54136 660 aaKnown RBP6.77□□□□□ -1.33
LIG3-210ENST00000588109 SH3BP2P78314 561 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 ALDH1L2Q3SY69 923 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 PTF1AQ7RTS3 328 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 BPHLQ86WA6 291 aaPredicted RBP6.77□□□□□ -1.33
LIG3-210ENST00000588109 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.77□□□□□ -1.33
LIG3-210ENST00000588109 ZNF511Q8NB15 262 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 SSH1Q8WYL5 1049 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 FRAT1Q92837 279 aaPredicted RBP6.77□□□□□ -1.33
LIG3-210ENST00000588109 GPKOWQ92917 476 aaPredicted RBP eCLIP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms