RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TTC39AQ5SRH9 613 aa17.06■□□□□ 0.32
LIG3-205ENST00000585941 XAGE2Q96GT9 111 aa17.06■□□□□ 0.32
LIG3-205ENST00000585941 TAF1LQ8IZX4 1826 aa17.05■□□□□ 0.32
LIG3-205ENST00000585941 NUCB2P80303 420 aa17.05■□□□□ 0.32
LIG3-205ENST00000585941 MCMDC2Q4G0Z9 681 aa17.05■□□□□ 0.32
LIG3-205ENST00000585941 ZNF512BQ96KM6 892 aaPredicted RBP17.05■□□□□ 0.32
LIG3-205ENST00000585941 HELLSQ9NRZ9 838 aa17.05■□□□□ 0.32
LIG3-205ENST00000585941 HMG20BQ9P0W2 317 aa17.05■□□□□ 0.32
LIG3-205ENST00000585941 CCNL1Q9UK58 526 aaPredicted RBP17.05■□□□□ 0.32
LIG3-205ENST00000585941 RBM8AQ9Y5S9 174 aaKnown RBP17.05■□□□□ 0.32
LIG3-205ENST00000585941 RAB3GAP1Q15042 981 aa17.04■□□□□ 0.32
LIG3-205ENST00000585941 DDX46Q7L014 1031 aaKnown RBP17.04■□□□□ 0.32
LIG3-205ENST00000585941 SEPT12Q8IYM1 358 aa17.04■□□□□ 0.32
LIG3-205ENST00000585941 EDC3Q96F86 508 aaKnown RBP17.04■□□□□ 0.32
LIG3-205ENST00000585941 INTS4Q96HW7 963 aaKnown RBP17.04■□□□□ 0.32
LIG3-205ENST00000585941 TMX3Q96JJ7 454 aa17.04■□□□□ 0.32
LIG3-205ENST00000585941 NARFQ9UHQ1 456 aa17.04■□□□□ 0.32
LIG3-205ENST00000585941 GOLIM4O00461 696 aa17.04■□□□□ 0.32
LIG3-205ENST00000585941 PDE8BO95263 885 aa17.04■□□□□ 0.32
LIG3-205ENST00000585941 HCLS1P14317 486 aaPredicted RBP17.04■□□□□ 0.32
LIG3-205ENST00000585941 CUL4AQ13619 759 aa17.04■□□□□ 0.32
LIG3-205ENST00000585941 VGLL2Q8N8G2 317 aa17.04■□□□□ 0.32
LIG3-205ENST00000585941 ARAP2Q8WZ64 1704 aa17.03■□□□□ 0.32
LIG3-205ENST00000585941 TAF5LO75529 589 aa17.03■□□□□ 0.32
LIG3-205ENST00000585941 ZFYP08048 801 aaPredicted RBP17.03■□□□□ 0.32
LIG3-205ENST00000585941 HMGB2P26583 209 aaKnown RBP17.03■□□□□ 0.32
LIG3-205ENST00000585941 PSMA5P28066 241 aa17.03■□□□□ 0.32
LIG3-205ENST00000585941 USPL1Q5W0Q7 1092 aa17.03■□□□□ 0.32
LIG3-205ENST00000585941 CREB3L3Q68CJ9 461 aa17.03■□□□□ 0.32
LIG3-205ENST00000585941 PRPF40BQ6NWY9 871 aaKnown RBP17.03■□□□□ 0.32
LIG3-205ENST00000585941 RASEFQ8IZ41 740 aa17.03■□□□□ 0.32
LIG3-205ENST00000585941 GBP4Q96PP9 640 aa17.03■□□□□ 0.32
LIG3-205ENST00000585941 UPF3BQ9BZI7 483 aaKnown RBP17.03■□□□□ 0.32
LIG3-205ENST00000585941 SSFA2P28290 1259 aa17.02■□□□□ 0.32
LIG3-205ENST00000585941 PUM3Q15397 648 aaKnown RBP17.02■□□□□ 0.32
LIG3-205ENST00000585941 TSGA10IPQ3SY00 556 aa17.02■□□□□ 0.32
LIG3-205ENST00000585941 MPHOSPH8Q99549 860 aa17.02■□□□□ 0.32
LIG3-205ENST00000585941 BCL11BQ9C0K0 894 aaPredicted RBP17.02■□□□□ 0.32
LIG3-205ENST00000585941 NYXQ9GZU5 481 aa17.02■□□□□ 0.32
LIG3-205ENST00000585941 RTCBQ9Y3I0 505 aaKnown RBP17.02■□□□□ 0.32
LIG3-205ENST00000585941 CYP46A1Q9Y6A2 500 aa17.02■□□□□ 0.32
LIG3-205ENST00000585941 U3KPZ7 1027 aaPredicted RBP17.02■□□□□ 0.32
LIG3-205ENST00000585941 DDX11L8A8MPP1 907 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 UQCRFS1P1P0C7P4 283 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 PTMSP20962 102 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 MCM4P33991 863 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 IGHMBP2P38935 993 aaKnown RBP17.01■□□□□ 0.31
LIG3-205ENST00000585941 KRT32Q14532 448 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 VPS53Q5VIR6 699 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 PTF1AQ7RTS3 328 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 LPIN2Q92539 896 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 TTC14Q96N46 770 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 QTRT2Q9H974 415 aaKnown RBP17.01■□□□□ 0.31
LIG3-205ENST00000585941 ZSWIM6Q9HCJ5 1215 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 FOXD4L1Q9NU39 408 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 MYH7P12883 1935 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 FAM177BA6PVY3 158 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 SLC27A2O14975 620 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 RNF113AO15541 343 aaKnown RBP17.01■□□□□ 0.31
LIG3-205ENST00000585941 ZPR1O75312 459 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 CASTP20810 708 aaKnown RBP17.01■□□□□ 0.31
LIG3-205ENST00000585941 ADORA1P30542 326 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 ZMYM1Q5SVZ6 1142 aa17.01■□□□□ 0.31
LIG3-205ENST00000585941 ZNF589Q86UQ0 364 aaPredicted RBP17.01■□□□□ 0.31
LIG3-205ENST00000585941 CDC5LQ99459 802 aaKnown RBP17.01■□□□□ 0.31
LIG3-205ENST00000585941 COL24A1Q17RW2 1714 aa17■□□□□ 0.31
LIG3-205ENST00000585941 GNPATO15228 680 aa17■□□□□ 0.31
LIG3-205ENST00000585941 TTF1Q15361 905 aaPredicted RBP17■□□□□ 0.31
LIG3-205ENST00000585941 SF3B3Q15393 1217 aaKnown RBP17■□□□□ 0.31
LIG3-205ENST00000585941 SLC10A5Q5PT55 438 aa17■□□□□ 0.31
LIG3-205ENST00000585941 TNPO1Q92973 898 aaKnown RBP17■□□□□ 0.31
LIG3-205ENST00000585941 JAKMIP1Q96N16 626 aaKnown RBP17■□□□□ 0.31
LIG3-205ENST00000585941 NDUFB9Q9Y6M9 179 aa17■□□□□ 0.31
LIG3-205ENST00000585941 C4BP0C0L5 1744 aa16.99■□□□□ 0.31
LIG3-205ENST00000585941 AKAP11Q9UKA4 1901 aa16.99■□□□□ 0.31
LIG3-205ENST00000585941 SLC5A1P13866 664 aa16.99■□□□□ 0.31
LIG3-205ENST00000585941 FGFR2P21802 821 aa16.99■□□□□ 0.31
LIG3-205ENST00000585941 FKBP4Q02790 459 aaKnown RBP eCLIP16.99■□□□□ 0.31
LIG3-205ENST00000585941 ZSCAN25Q6NSZ9 544 aa16.99■□□□□ 0.31
LIG3-205ENST00000585941 CLEC17AQ6ZS10 378 aa16.99■□□□□ 0.31
LIG3-205ENST00000585941 RUFY3Q7L099 469 aa16.99■□□□□ 0.31
LIG3-205ENST00000585941 FBXO41Q8TF61 875 aa16.99■□□□□ 0.31
LIG3-205ENST00000585941 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.99■□□□□ 0.31
LIG3-205ENST00000585941 LIMCH1Q9UPQ0 1083 aa16.99■□□□□ 0.31
LIG3-205ENST00000585941 RPAP1Q9BWH6 1393 aaPredicted RBP16.99■□□□□ 0.31
LIG3-205ENST00000585941 FAM196AQ6ZSG2 479 aa16.98■□□□□ 0.31
LIG3-205ENST00000585941 ZSCAN31Q96LW9 406 aaPredicted RBP16.98■□□□□ 0.31
LIG3-205ENST00000585941 SETDB2Q96T68 719 aa16.98■□□□□ 0.31
LIG3-205ENST00000585941 DSCC1Q9BVC3 393 aa16.98■□□□□ 0.31
LIG3-205ENST00000585941 ADRA2BP18089 450 aa16.97■□□□□ 0.31
LIG3-205ENST00000585941 ARID4AP29374 1257 aaPredicted RBP16.97■□□□□ 0.31
LIG3-205ENST00000585941 KCNQ4P56696 695 aa16.97■□□□□ 0.31
LIG3-205ENST00000585941 FAM182BQ5T319 152 aa16.97■□□□□ 0.31
LIG3-205ENST00000585941 ALDH8A1Q9H2A2 487 aaPredicted RBP16.97■□□□□ 0.31
LIG3-205ENST00000585941 PDRG1Q9NUG6 133 aa16.97■□□□□ 0.31
LIG3-205ENST00000585941 GTF2E1P29083 439 aaPredicted RBP16.97■□□□□ 0.31
LIG3-205ENST00000585941 ANKRD1Q15327 319 aa16.97■□□□□ 0.31
LIG3-205ENST00000585941 ERFEQ4G0M1 354 aa16.97■□□□□ 0.31
LIG3-205ENST00000585941 BCL2L12Q9HB09 334 aa16.97■□□□□ 0.31
LIG3-205ENST00000585941 SH2B1Q9NRF2 756 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms