RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	SAGE1	Q9NXZ1	904 aa		11.46	□□□□□ -0.57
NUP85-223	ENST00000583877	PSMD14	O00487	310 aa		11.45	□□□□□ -0.58
NUP85-223	ENST00000583877	AIMP1	Q12904	312 aa	Known RBP	11.45	□□□□□ -0.58
NUP85-223	ENST00000583877	WASHC4	Q2M389	1173 aa		11.45	□□□□□ -0.58
NUP85-223	ENST00000583877	RGMB	Q6NW40	437 aa		11.45	□□□□□ -0.58
NUP85-223	ENST00000583877	COL4A1	P02462	1669 aa		11.45	□□□□□ -0.58
NUP85-223	ENST00000583877	SPEF2	Q9C093	1822 aa		11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	CENPF	P49454	3210 aa		11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	FAM155A	B1AL88	458 aa	Predicted RBP	11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	RPS12	P25398	132 aa	Known RBP	11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	RIPK4	P57078	832 aa		11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	SAMD7	Q7Z3H4	446 aa		11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	KRT26	Q7Z3Y9	468 aa		11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	C2orf69	Q8N8R5	385 aa		11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	CCDC102A	Q96A19	550 aa		11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	GBA2	Q9HCG7	927 aa	Predicted RBP	11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.44	□□□□□ -0.58
NUP85-223	ENST00000583877	LMOD3	Q0VAK6	560 aa		11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	SF3B3	Q15393	1217 aa	Known RBP	11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	DLK2	Q6UY11	383 aa		11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	NECTIN2	Q92692	538 aa		11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	DCPS	Q96C86	337 aa	Known RBP	11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	DBNDD1	Q9H9R9	158 aa		11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	ZNF646	O15015	1829 aa	Predicted RBP	11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	PAPPA2	Q9BXP8	1791 aa		11.43	□□□□□ -0.58
NUP85-223	ENST00000583877	EGFR	P00533	1210 aa		11.42	□□□□□ -0.58
NUP85-223	ENST00000583877	ZNF157	P51786	506 aa	Predicted RBP	11.42	□□□□□ -0.58
NUP85-223	ENST00000583877	KIF23	Q02241	960 aa	Predicted RBP	11.42	□□□□□ -0.58
NUP85-223	ENST00000583877	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.42	□□□□□ -0.58
NUP85-223	ENST00000583877	CELF1	Q92879	486 aa	Known RBP	11.42	□□□□□ -0.58
NUP85-223	ENST00000583877	EYA3	Q99504	573 aa		11.42	□□□□□ -0.58
NUP85-223	ENST00000583877	POLL	Q9UGP5	575 aa		11.42	□□□□□ -0.58
NUP85-223	ENST00000583877	RTL9	Q8NET4	1388 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	MKI67	P46013	3256 aa	Known RBP	11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	ADM5	C9JUS6	153 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	C6orf229	H3BNL8	230 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	RIMBP2	O15034	1052 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	ECE2	O60344	883 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	TMPO	P42166	694 aa	Known RBP	11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	GPSM2	P81274	684 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	PLBD2	Q8NHP8	589 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	ISCA1	Q9BUE6	129 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	KCNQ5	Q9NR82	932 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	RNF186	Q9NXI6	227 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	ZNF609	O15014	1411 aa		11.41	□□□□□ -0.58
NUP85-223	ENST00000583877	ECM29	Q5VYK3	1845 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	TRPA1	O75762	1119 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	SLC10A3	P09131	477 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	VIL1	P09327	827 aa	Known RBP	11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	DOK7	Q18PE1	504 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	KIF4B	Q2VIQ3	1234 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	RBM26	Q5T8P6	1007 aa	Known RBP	11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	ANKRD13D	Q6ZTN6	518 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	SULF1	Q8IWU6	871 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	REM2	Q8IYK8	340 aa	Predicted RBP	11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	TBC1D16	Q8TBP0	767 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	FAM89A	Q96GI7	184 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	CHPF2	Q9P2E5	772 aa		11.4	□□□□□ -0.58
NUP85-223	ENST00000583877	LAMB1	P07942	1786 aa		11.39	□□□□□ -0.59
NUP85-223	ENST00000583877	HTT	P42858	3142 aa		11.39	□□□□□ -0.59
NUP85-223	ENST00000583877	CHL1	O00533	1208 aa		11.39	□□□□□ -0.59
NUP85-223	ENST00000583877	HOXB7	P09629	217 aa		11.39	□□□□□ -0.59
NUP85-223	ENST00000583877	RPS8	P62241	208 aa	Known RBP	11.39	□□□□□ -0.59
NUP85-223	ENST00000583877	ZNF428	Q96B54	188 aa		11.39	□□□□□ -0.59
NUP85-223	ENST00000583877	CSRNP1	Q96S65	589 aa		11.39	□□□□□ -0.59
NUP85-223	ENST00000583877	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.39	□□□□□ -0.59
NUP85-223	ENST00000583877	PODXL2	Q9NZ53	605 aa		11.39	□□□□□ -0.59
NUP85-223	ENST00000583877	ATP5J2-PTCD1	G3V325	749 aa		11.38	□□□□□ -0.59
NUP85-223	ENST00000583877	TRIM28	Q13263	835 aa	Known RBP	11.38	□□□□□ -0.59
NUP85-223	ENST00000583877	KRT24	Q2M2I5	525 aa		11.38	□□□□□ -0.59
NUP85-223	ENST00000583877	HDGFL1	Q5TGJ6	251 aa		11.38	□□□□□ -0.59
NUP85-223	ENST00000583877	CTU1	Q7Z7A3	348 aa	Known RBP	11.38	□□□□□ -0.59
NUP85-223	ENST00000583877	CDCA5	Q96FF9	252 aa		11.38	□□□□□ -0.59
NUP85-223	ENST00000583877	GGA3	Q9NZ52	723 aa		11.38	□□□□□ -0.59
NUP85-223	ENST00000583877	DBF4	Q9UBU7	674 aa	Predicted RBP	11.38	□□□□□ -0.59
NUP85-223	ENST00000583877	CACNA1F	O60840	1977 aa		11.37	□□□□□ -0.59
NUP85-223	ENST00000583877	IRS4	O14654	1257 aa	Predicted RBP	11.37	□□□□□ -0.59
NUP85-223	ENST00000583877	HSP90B1	P14625	803 aa	Known RBP	11.37	□□□□□ -0.59
NUP85-223	ENST00000583877	SOX10	P56693	466 aa		11.37	□□□□□ -0.59
NUP85-223	ENST00000583877	ZNF280A	P59817	542 aa	Predicted RBP	11.37	□□□□□ -0.59
NUP85-223	ENST00000583877	FKBP1B	P68106	108 aa		11.37	□□□□□ -0.59
NUP85-223	ENST00000583877	AGBL3	Q8NEM8	1001 aa		11.37	□□□□□ -0.59
NUP85-223	ENST00000583877	HYPK	Q9NX55	129 aa		11.37	□□□□□ -0.59
NUP85-223	ENST00000583877	BRCA2	P51587	3418 aa		11.37	□□□□□ -0.59
NUP85-223	ENST00000583877	ASTN2	O75129	1339 aa	Predicted RBP	11.36	□□□□□ -0.59
NUP85-223	ENST00000583877		G3V3G9	751 aa		11.36	□□□□□ -0.59
NUP85-223	ENST00000583877	SCARF1	Q14162	830 aa		11.36	□□□□□ -0.59
NUP85-223	ENST00000583877	RTL5	Q5HYW3	569 aa	Predicted RBP	11.36	□□□□□ -0.59
NUP85-223	ENST00000583877	DCAF8	Q5TAQ9	597 aa		11.36	□□□□□ -0.59
NUP85-223	ENST00000583877	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.36	□□□□□ -0.59
NUP85-223	ENST00000583877	RASAL3	Q86YV0	1011 aa		11.36	□□□□□ -0.59
NUP85-223	ENST00000583877	ANKIB1	Q9P2G1	1089 aa		11.36	□□□□□ -0.59
NUP85-223	ENST00000583877	LAS1L	Q9Y4W2	734 aa	Known RBP	11.36	□□□□□ -0.59
NUP85-223	ENST00000583877	KIAA0100	Q14667	2235 aa	Known RBP	11.36	□□□□□ -0.59
NUP85-223	ENST00000583877	PITPNM2	Q9BZ72	1349 aa		11.35	□□□□□ -0.59
NUP85-223	ENST00000583877	UFL1	O94874	794 aa		11.35	□□□□□ -0.59
NUP85-223	ENST00000583877	NEUROD2	Q15784	382 aa		11.35	□□□□□ -0.59
NUP85-223	ENST00000583877	PKN2	Q16513	984 aa	Known RBP	11.35	□□□□□ -0.59

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