RNA–Protein interactions for RNA: ENST00000583697.1

CDK5RAP3-229, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 3

Gene CDK5RAP3, Length 852 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-229	ENST00000583697	CDC37L1	Q7L3B6	337 aa		11.19	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	TBC1D16	Q8TBP0	767 aa		11.19	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	TSR2	Q969E8	191 aa	Known RBP	11.19	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.19	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.19	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	WBP1L	Q9NX94	342 aa		11.19	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	MAP3K2	Q9Y2U5	619 aa		11.19	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.19	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	SCN9A	Q15858	1988 aa		11.19	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	LBX1	P52954	281 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	DOK7	Q18PE1	504 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	CCDC27	Q2M243	656 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	TWISTNB	Q3B726	338 aa	Predicted RBP	11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	CST9	Q5W186	159 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	ANKRD18A	Q8IVF6	992 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	DPF2	Q92785	391 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	GPR101	Q96P66	508 aa	Predicted RBP	11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	CDC5L	Q99459	802 aa	Known RBP	11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	SEC31B	Q9NQW1	1179 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	PODXL2	Q9NZ53	605 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	POLL	Q9UGP5	575 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	GGA1	Q9UJY5	639 aa		11.18	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	RTL9	Q8NET4	1388 aa		11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	XDH	P47989	1333 aa		11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	SHTN1	A0MZ66	631 aa		11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	HSPA8	P11142	646 aa	Known RBP	11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	CTSW	P56202	376 aa		11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	KSR2	Q6VAB6	950 aa		11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	SAPCD2	Q86UD0	394 aa		11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	TSPYL6	Q8N831	410 aa		11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	PGAP2	Q9UHJ9	254 aa		11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	ZNF609	O15014	1411 aa		11.17	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	PI4KAP2	A4QPH2	592 aa		11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	HIRA	P54198	1017 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	KIF4B	Q2VIQ3	1234 aa		11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	SAMD7	Q7Z3H4	446 aa		11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	WWC1	Q8IX03	1113 aa		11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	PI4KAP1	Q8N8J0	262 aa		11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	JARID2	Q92833	1246 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	DCPS	Q96C86	337 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	HHIPL1	Q96JK4	782 aa		11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	MRS2	Q9HD23	443 aa		11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	CACNA1F	O60840	1977 aa		11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697		A0A1B0GUL6	1792 aa		11.16	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	IL16	Q14005	1332 aa		11.15	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	ZNF646	O15015	1829 aa	Predicted RBP	11.15	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	ANP32C	O43423	234 aa		11.15	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	MAP2K2	P36507	400 aa		11.15	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	RBM26	Q5T8P6	1007 aa	Known RBP	11.15	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	GGA3	Q9NZ52	723 aa		11.15	□□□□□ -0.62
CDK5RAP3-229	ENST00000583697	MED23	Q9ULK4	1368 aa		11.15	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	FANCI	Q9NVI1	1328 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	NEURL1B	A8MQ27	555 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	AOC2	O75106	756 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	IGKV5-2	P06315	115 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	ATP2B4	P23634	1241 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	FKBP5	Q13451	457 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	CWF19L2	Q2TBE0	894 aa	Known RBP	11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	CCDC184	Q52MB2	194 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	KRT26	Q7Z3Y9	468 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	USP48	Q86UV5	1035 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	SULF1	Q8IWU6	871 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	MYH16	Q9H6N6	1097 aa		11.14	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	PAPPA2	Q9BXP8	1791 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	ADM5	C9JUS6	153 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	CA12	O43570	354 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	EGFR	P00533	1210 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	SLC4A2	P04920	1241 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	IGHMBP2	P38935	993 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	BRPF1	P55201	1214 aa	Predicted RBP	11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	HUNK	P57058	714 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	FLII	Q13045	1269 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	NOG	Q13253	232 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	UBE3B	Q7Z3V4	1068 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	GREM2	Q9H772	168 aa		11.13	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	VIL1	P09327	827 aa	Known RBP	11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	NCBP3	Q53F19	620 aa	Known RBP	11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	PODN	Q7Z5L7	613 aa		11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	C2orf69	Q8N8R5	385 aa		11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	AGBL3	Q8NEM8	1001 aa		11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	TTLL11	Q8NHH1	800 aa		11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	FBXW7	Q969H0	707 aa		11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	GBA2	Q9HCG7	927 aa	Predicted RBP	11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	KCNQ5	Q9NR82	932 aa		11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	SALL2	Q9Y467	1007 aa	Predicted RBP	11.12	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	MYO3B	Q8WXR4	1341 aa		11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	USP17L3	A6NCW0	530 aa		11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	USP17L4	A6NCW7	530 aa		11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	ANGEL2	Q5VTE6	544 aa	Known RBP	11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	DIEXF	Q68CQ4	756 aa	Known RBP	11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	G2E3	Q7L622	706 aa		11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	USP17L1	Q7RTZ2	530 aa		11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	DNAAF4	Q8WXU2	420 aa		11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	BSDC1	Q9NW68	430 aa	Predicted RBP	11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	TSKS	Q9UJT2	592 aa		11.11	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	USP17L8	P0C7I0	530 aa		11.1	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	ITGA6	P23229	1130 aa		11.1	□□□□□ -0.63
CDK5RAP3-229	ENST00000583697	KCNJ4	P48050	445 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms