RNA–Protein interactions for RNA: ENST00000583438.1

PPP4R1-225, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-225	ENST00000583438	DCAF5	Q96JK2	942 aa		10.85	□□□□□ -0.67
PPP4R1-225	ENST00000583438	SALL2	Q9Y467	1007 aa	Predicted RBP	10.85	□□□□□ -0.67
PPP4R1-225	ENST00000583438	SLX4	Q8IY92	1834 aa		10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	POLRMT	O00411	1230 aa	Known RBP	10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	AP1G2	O75843	785 aa		10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	RASSF7	Q02833	373 aa		10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	C9orf131	Q5VYM1	1079 aa		10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	ARHGAP27	Q6ZUM4	889 aa		10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	RETREG3	Q86VR2	466 aa		10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	DNAJC10	Q8IXB1	793 aa		10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	PRR7	Q8TB68	274 aa		10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	LGR6	Q9HBX8	967 aa		10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	SOS1	Q07889	1333 aa	Predicted RBP	10.84	□□□□□ -0.67
PPP4R1-225	ENST00000583438	FMNL1	O95466	1100 aa	Predicted RBP	10.83	□□□□□ -0.68
PPP4R1-225	ENST00000583438	TM4SF1	P30408	202 aa		10.83	□□□□□ -0.68
PPP4R1-225	ENST00000583438	SLC39A6	Q13433	755 aa		10.83	□□□□□ -0.68
PPP4R1-225	ENST00000583438	SULT6B1	Q6IMI4	303 aa		10.83	□□□□□ -0.68
PPP4R1-225	ENST00000583438	NLGN1	Q8N2Q7	840 aa		10.83	□□□□□ -0.68
PPP4R1-225	ENST00000583438	ZNF516	Q92618	1163 aa		10.83	□□□□□ -0.68
PPP4R1-225	ENST00000583438	SNRK	Q9NRH2	765 aa		10.83	□□□□□ -0.68
PPP4R1-225	ENST00000583438	HCST	Q9UBK5	93 aa		10.83	□□□□□ -0.68
PPP4R1-225	ENST00000583438	TLL1	O43897	1013 aa		10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	ZPR1	O75312	459 aa		10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	RFC4	P35249	363 aa		10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	CABP4	P57796	275 aa		10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	FLII	Q13045	1269 aa		10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	MMRN1	Q13201	1228 aa		10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	MCM6	Q14566	821 aa		10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	BANK1	Q8NDB2	785 aa		10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	USB1	Q9BQ65	265 aa	Known RBP	10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	CCDC87	Q9NVE4	849 aa		10.82	□□□□□ -0.68
PPP4R1-225	ENST00000583438	TOMM70	O94826	608 aa		10.81	□□□□□ -0.68
PPP4R1-225	ENST00000583438	MTHFS	P49914	203 aa		10.81	□□□□□ -0.68
PPP4R1-225	ENST00000583438	CTDSPL2	Q05D32	466 aa		10.81	□□□□□ -0.68
PPP4R1-225	ENST00000583438	TRIM26	Q12899	539 aa	Predicted RBP	10.81	□□□□□ -0.68
PPP4R1-225	ENST00000583438	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.81	□□□□□ -0.68
PPP4R1-225	ENST00000583438	USPL1	Q5W0Q7	1092 aa		10.81	□□□□□ -0.68
PPP4R1-225	ENST00000583438	TSC1	Q92574	1164 aa		10.81	□□□□□ -0.68
PPP4R1-225	ENST00000583438	ZBTB1	Q9Y2K1	713 aa		10.81	□□□□□ -0.68
PPP4R1-225	ENST00000583438	COL15A1	P39059	1388 aa		10.8	□□□□□ -0.68
PPP4R1-225	ENST00000583438	CYP19A1	P11511	503 aa	Predicted RBP	10.8	□□□□□ -0.68
PPP4R1-225	ENST00000583438	NFIX	Q14938	502 aa		10.8	□□□□□ -0.68
PPP4R1-225	ENST00000583438	FAM160A2	Q8N612	972 aa	Predicted RBP	10.8	□□□□□ -0.68
PPP4R1-225	ENST00000583438	SPSB2	Q99619	263 aa		10.8	□□□□□ -0.68
PPP4R1-225	ENST00000583438	IL21	Q9HBE4	155 aa		10.8	□□□□□ -0.68
PPP4R1-225	ENST00000583438	PARP3	Q9Y6F1	533 aa		10.8	□□□□□ -0.68
PPP4R1-225	ENST00000583438	DLG5	Q8TDM6	1919 aa		10.8	□□□□□ -0.68
PPP4R1-225	ENST00000583438	POTEC	B2RU33	542 aa		10.79	□□□□□ -0.68
PPP4R1-225	ENST00000583438	USP17L8	P0C7I0	530 aa		10.79	□□□□□ -0.68
PPP4R1-225	ENST00000583438	COL13A1	Q5TAT6	717 aa	Predicted RBP	10.79	□□□□□ -0.68
PPP4R1-225	ENST00000583438	RNF181	Q9P0P0	153 aa		10.79	□□□□□ -0.68
PPP4R1-225	ENST00000583438	NFKBIE	O00221	500 aa		10.78	□□□□□ -0.68
PPP4R1-225	ENST00000583438	HSP90AB1	P08238	724 aa	Known RBP	10.78	□□□□□ -0.68
PPP4R1-225	ENST00000583438	HMOX1	P09601	288 aa		10.78	□□□□□ -0.68
PPP4R1-225	ENST00000583438	SLC52A2	Q9HAB3	445 aa		10.78	□□□□□ -0.68
PPP4R1-225	ENST00000583438	RRAGC	Q9HB90	399 aa		10.78	□□□□□ -0.68
PPP4R1-225	ENST00000583438	PIM2	Q9P1W9	311 aa		10.78	□□□□□ -0.68
PPP4R1-225	ENST00000583438	PER1	O15534	1290 aa	Predicted RBP	10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	RNMT	O43148	476 aa	Known RBP	10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	MTHFSD	Q2M296	383 aa	Known RBP	10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	AMOT	Q4VCS5	1084 aa		10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	DALRD3	Q5D0E6	543 aa	Known RBP	10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	MORC1	Q86VD1	984 aa		10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	CCDC24	Q8N4L8	307 aa		10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	JMY	Q8N9B5	988 aa		10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	MTMR14	Q8NCE2	650 aa		10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	HELB	Q8NG08	1087 aa	Predicted RBP	10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	KIF7	Q2M1P5	1343 aa		10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	ADAMTSL1	Q8N6G6	1762 aa		10.77	□□□□□ -0.69
PPP4R1-225	ENST00000583438	ADH1B	P00325	375 aa		10.76	□□□□□ -0.69
PPP4R1-225	ENST00000583438	AKAP4	Q5JQC9	854 aa		10.76	□□□□□ -0.69
PPP4R1-225	ENST00000583438	C1orf141	Q5JVX7	400 aa		10.76	□□□□□ -0.69
PPP4R1-225	ENST00000583438	DESI1	Q6ICB0	168 aa		10.76	□□□□□ -0.69
PPP4R1-225	ENST00000583438	NKX2-3	Q8TAU0	364 aa		10.76	□□□□□ -0.69
PPP4R1-225	ENST00000583438	LRRN4	Q8WUT4	740 aa		10.76	□□□□□ -0.69
PPP4R1-225	ENST00000583438	KLRG1	Q96E93	195 aa		10.76	□□□□□ -0.69
PPP4R1-225	ENST00000583438	PRDM9	Q9NQV7	894 aa		10.76	□□□□□ -0.69
PPP4R1-225	ENST00000583438	LAMB4	A4D0S4	1761 aa		10.75	□□□□□ -0.69
PPP4R1-225	ENST00000583438	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
PPP4R1-225	ENST00000583438	MSS51	Q4VC12	460 aa		10.75	□□□□□ -0.69
PPP4R1-225	ENST00000583438	ERICH6	Q7L0X2	663 aa		10.75	□□□□□ -0.69
PPP4R1-225	ENST00000583438	PCGF6	Q9BYE7	350 aa		10.75	□□□□□ -0.69
PPP4R1-225	ENST00000583438	HMX1	Q9NP08	348 aa	Predicted RBP	10.75	□□□□□ -0.69
PPP4R1-225	ENST00000583438	NARF	Q9UHQ1	456 aa		10.75	□□□□□ -0.69
PPP4R1-225	ENST00000583438	COL4A5	P29400	1685 aa		10.74	□□□□□ -0.69
PPP4R1-225	ENST00000583438	KCNQ3	O43525	872 aa		10.74	□□□□□ -0.69
PPP4R1-225	ENST00000583438	HMGB2	P26583	209 aa	Known RBP	10.74	□□□□□ -0.69
PPP4R1-225	ENST00000583438	SLC51A	Q86UW1	340 aa		10.74	□□□□□ -0.69
PPP4R1-225	ENST00000583438	LTBP1	Q14766	1721 aa		10.74	□□□□□ -0.69
PPP4R1-225	ENST00000583438	KDM3B	Q7LBC6	1761 aa		10.73	□□□□□ -0.69
PPP4R1-225	ENST00000583438	NUP98	P52948	1817 aa		10.73	□□□□□ -0.69
PPP4R1-225	ENST00000583438	SERPINB2	P05120	415 aa		10.73	□□□□□ -0.69
PPP4R1-225	ENST00000583438	JUND	P17535	347 aa		10.73	□□□□□ -0.69
PPP4R1-225	ENST00000583438	TBC1D9B	Q66K14	1250 aa		10.73	□□□□□ -0.69
PPP4R1-225	ENST00000583438	LYPD8	Q6UX82	237 aa		10.73	□□□□□ -0.69
PPP4R1-225	ENST00000583438	IL17RE	Q8NFR9	667 aa		10.73	□□□□□ -0.69
PPP4R1-225	ENST00000583438	PRAMEF22	A3QJZ6	481 aa		10.72	□□□□□ -0.69
PPP4R1-225	ENST00000583438	ITGBL1	O95965	494 aa	Predicted RBP	10.72	□□□□□ -0.69
PPP4R1-225	ENST00000583438	CANX	P27824	592 aa	Known RBP	10.72	□□□□□ -0.69
PPP4R1-225	ENST00000583438	PIP4K2A	P48426	406 aa	Predicted RBP	10.72	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms