RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 RGS9O75916 674 aaPredicted RBP11.64□□□□□ -0.55
SS18-214ENST00000580003 HOXB4P17483 251 aaPredicted RBP11.64□□□□□ -0.55
SS18-214ENST00000580003 NUDT8Q8WV74 236 aa11.64□□□□□ -0.55
SS18-214ENST00000580003 JPH1Q9HDC5 661 aaPredicted RBP11.64□□□□□ -0.55
SS18-214ENST00000580003 J3QW42 95 aa11.63□□□□□ -0.55
SS18-214ENST00000580003 GNB5O14775 395 aa11.63□□□□□ -0.55
SS18-214ENST00000580003 LILRB5O75023 590 aa11.63□□□□□ -0.55
SS18-214ENST00000580003 PMEPA1Q969W9 287 aa11.63□□□□□ -0.55
SS18-214ENST00000580003 SPACA7Q96KW9 195 aa11.63□□□□□ -0.55
SS18-214ENST00000580003 FRRS1LQ9P0K9 344 aa11.63□□□□□ -0.55
SS18-214ENST00000580003 CES1P23141 567 aa11.62□□□□□ -0.55
SS18-214ENST00000580003 PERM1Q5SV97 790 aa11.62□□□□□ -0.55
SS18-214ENST00000580003 LINC00114Q6XXX2 140 aa11.62□□□□□ -0.55
SS18-214ENST00000580003 C20orf204Q6ZNR8 217 aa11.62□□□□□ -0.55
SS18-214ENST00000580003 SNX29Q8TEQ0 813 aa11.62□□□□□ -0.55
SS18-214ENST00000580003 PRDM6Q9NQX0 595 aa11.62□□□□□ -0.55
SS18-214ENST00000580003 CNTN3Q9P232 1028 aa11.62□□□□□ -0.55
SS18-214ENST00000580003 PHACTR2O75167 634 aa11.61□□□□□ -0.55
SS18-214ENST00000580003 TNFRSF21O75509 655 aa11.61□□□□□ -0.55
SS18-214ENST00000580003 CYP2E1P05181 493 aaPredicted RBP11.61□□□□□ -0.55
SS18-214ENST00000580003 C1orf127Q8N9H9 656 aa11.61□□□□□ -0.55
SS18-214ENST00000580003 DCTN4Q9UJW0 460 aa11.61□□□□□ -0.55
SS18-214ENST00000580003 NEFLP07196 543 aa11.6□□□□□ -0.55
SS18-214ENST00000580003 IRS1P35568 1242 aa11.6□□□□□ -0.55
SS18-214ENST00000580003 C8orf86Q6ZUL3 223 aa11.6□□□□□ -0.55
SS18-214ENST00000580003 NCAPG2Q86XI2 1143 aa11.6□□□□□ -0.55
SS18-214ENST00000580003 LPIN3Q9BQK8 851 aa11.6□□□□□ -0.55
SS18-214ENST00000580003 SMG9Q9H0W8 520 aaKnown RBP11.6□□□□□ -0.55
SS18-214ENST00000580003 MAPK1P28482 360 aa11.59□□□□□ -0.55
SS18-214ENST00000580003 PLD4Q96BZ4 506 aa11.59□□□□□ -0.55
SS18-214ENST00000580003 RBCK1Q9BYM8 510 aa11.59□□□□□ -0.55
SS18-214ENST00000580003 NOP53Q9NZM5 478 aaKnown RBP11.59□□□□□ -0.55
SS18-214ENST00000580003 KANSL3Q9P2N6 904 aa11.59□□□□□ -0.55
SS18-214ENST00000580003 FOXD3Q9UJU5 478 aaPredicted RBP11.59□□□□□ -0.55
SS18-214ENST00000580003 COL13A1Q5TAT6 717 aaPredicted RBP11.58□□□□□ -0.56
SS18-214ENST00000580003 FAM129BQ96TA1 746 aa11.58□□□□□ -0.56
SS18-214ENST00000580003 SPDYE3A6NKU9 549 aa11.57□□□□□ -0.56
SS18-214ENST00000580003 KIF4AO95239 1232 aa11.57□□□□□ -0.56
SS18-214ENST00000580003 TTC9Q92623 222 aa11.57□□□□□ -0.56
SS18-214ENST00000580003 CHRDQ9H2X0 955 aa11.57□□□□□ -0.56
SS18-214ENST00000580003 KCNMA1Q12791 1236 aa11.56□□□□□ -0.56
SS18-214ENST00000580003 DMRTB1Q96MA1 342 aa11.56□□□□□ -0.56
SS18-214ENST00000580003 PLVAPQ9BX97 442 aa11.56□□□□□ -0.56
SS18-214ENST00000580003 AFF1P51825 1210 aaKnown RBP11.55□□□□□ -0.56
SS18-214ENST00000580003 TRIM11Q96F44 468 aa11.55□□□□□ -0.56
SS18-214ENST00000580003 ZFYVE28Q9HCC9 887 aa11.55□□□□□ -0.56
SS18-214ENST00000580003 SALL4Q9UJQ4 1053 aa11.55□□□□□ -0.56
SS18-214ENST00000580003 AMOTL2Q9Y2J4 779 aa11.55□□□□□ -0.56
SS18-214ENST00000580003 EREGO14944 169 aa11.54□□□□□ -0.56
SS18-214ENST00000580003 NID1P14543 1247 aa11.54□□□□□ -0.56
SS18-214ENST00000580003 SMNDC1O75940 238 aaKnown RBP eCLIP11.53□□□□□ -0.56
SS18-214ENST00000580003 EDN3P14138 238 aa11.53□□□□□ -0.56
SS18-214ENST00000580003 TRAPPC3LQ5T215 181 aa11.53□□□□□ -0.56
SS18-214ENST00000580003 SND1Q7KZF4 910 aaKnown RBP eCLIP11.53□□□□□ -0.56
SS18-214ENST00000580003 CEP120Q8N960 986 aa11.53□□□□□ -0.56
SS18-214ENST00000580003 NIF3L1Q9GZT8 377 aa11.53□□□□□ -0.56
SS18-214ENST00000580003 SUV39H2Q9H5I1 410 aa11.53□□□□□ -0.56
SS18-214ENST00000580003 GPR182O15218 404 aa11.52□□□□□ -0.57
SS18-214ENST00000580003 RASSF7Q02833 373 aa11.52□□□□□ -0.57
SS18-214ENST00000580003 COL9A3Q14050 684 aaPredicted RBP11.52□□□□□ -0.57
SS18-214ENST00000580003 TMC7Q7Z402 723 aa11.52□□□□□ -0.57
SS18-214ENST00000580003 WFDC8Q8IUA0 241 aa11.52□□□□□ -0.57
SS18-214ENST00000580003 ZSCAN29Q8IWY8 852 aaPredicted RBP11.52□□□□□ -0.57
SS18-214ENST00000580003 ATP11AP98196 1134 aa11.51□□□□□ -0.57
SS18-214ENST00000580003 CEP135Q66GS9 1140 aa11.51□□□□□ -0.57
SS18-214ENST00000580003 GDF6Q6KF10 455 aaPredicted RBP11.51□□□□□ -0.57
SS18-214ENST00000580003 ALYREFQ86V81 257 aaKnown RBP11.51□□□□□ -0.57
SS18-214ENST00000580003 PBX4Q9BYU1 374 aa11.51□□□□□ -0.57
SS18-214ENST00000580003 RASSF4Q9H2L5 321 aa11.51□□□□□ -0.57
SS18-214ENST00000580003 CPNE3O75131 537 aaKnown RBP11.5□□□□□ -0.57
SS18-214ENST00000580003 GRIK5Q16478 980 aa11.5□□□□□ -0.57
SS18-214ENST00000580003 PRRT3Q5FWE3 981 aa11.5□□□□□ -0.57
SS18-214ENST00000580003 MSL1Q68DK7 614 aa11.5□□□□□ -0.57
SS18-214ENST00000580003 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.5□□□□□ -0.57
SS18-214ENST00000580003 TRIM28Q13263 835 aaKnown RBP11.49□□□□□ -0.57
SS18-214ENST00000580003 ORC1Q13415 861 aa11.49□□□□□ -0.57
SS18-214ENST00000580003 DMRTC2Q8IXT2 367 aaPredicted RBP11.49□□□□□ -0.57
SS18-214ENST00000580003 CACTIN-AS1Q8N1I8 211 aa11.49□□□□□ -0.57
SS18-214ENST00000580003 TMEM151AQ8N4L1 468 aa11.49□□□□□ -0.57
SS18-214ENST00000580003 ALKBH8Q96BT7 664 aaKnown RBP11.49□□□□□ -0.57
SS18-214ENST00000580003 TRIM33Q9UPN9 1127 aa11.49□□□□□ -0.57
SS18-214ENST00000580003 FAM177BA6PVY3 158 aa11.48□□□□□ -0.57
SS18-214ENST00000580003 GDF11O95390 407 aa11.48□□□□□ -0.57
SS18-214ENST00000580003 IGHA2P01877 340 aa11.48□□□□□ -0.57
SS18-214ENST00000580003 POLR3DP05423 398 aaPredicted RBP11.48□□□□□ -0.57
SS18-214ENST00000580003 COL8A1P27658 744 aa11.48□□□□□ -0.57
SS18-214ENST00000580003 RAC1P63000 192 aa11.48□□□□□ -0.57
SS18-214ENST00000580003 GZF1Q9H116 711 aaPredicted RBP11.48□□□□□ -0.57
SS18-214ENST00000580003 DNAJC25Q9H1X3 360 aa11.48□□□□□ -0.57
SS18-214ENST00000580003 PLCB3Q01970 1234 aa11.47□□□□□ -0.57
SS18-214ENST00000580003 IL22RA1Q8N6P7 574 aa11.47□□□□□ -0.57
SS18-214ENST00000580003 ASB16Q96NS5 453 aa11.47□□□□□ -0.57
SS18-214ENST00000580003 LACRTQ9GZZ8 138 aa11.47□□□□□ -0.57
SS18-214ENST00000580003 DZANK1Q9NVP4 752 aa11.47□□□□□ -0.57
SS18-214ENST00000580003 ZBTB7CA1YPR0 619 aa11.46□□□□□ -0.57
SS18-214ENST00000580003 EIF1AYO14602 144 aaKnown RBP11.46□□□□□ -0.57
SS18-214ENST00000580003 ACPPP15309 386 aa11.46□□□□□ -0.57
SS18-214ENST00000580003 GSK3AP49840 483 aa11.46□□□□□ -0.57
SS18-214ENST00000580003 GALNT12Q8IXK2 581 aa11.46□□□□□ -0.57
SS18-214ENST00000580003 DCAF5Q96JK2 942 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms