RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 ZNF609O15014 1411 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 KCNQ2O43526 872 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 ONECUT3O60422 494 aaPredicted RBP13.34□□□□□ -0.27
SKA2-204ENST00000578519 ZPR1O75312 459 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 GTF2E1P29083 439 aaPredicted RBP13.34□□□□□ -0.27
SKA2-204ENST00000578519 TIMM10P62072 90 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 SUSD4Q5VX71 490 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 SAMD1Q6SPF0 538 aaPredicted RBP13.34□□□□□ -0.27
SKA2-204ENST00000578519 CHMP4CQ96CF2 233 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 CDC5LQ99459 802 aaKnown RBP13.34□□□□□ -0.27
SKA2-204ENST00000578519 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.34□□□□□ -0.27
SKA2-204ENST00000578519 RIPOR2Q9Y4F9 1068 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 SNX14Q9Y5W7 946 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 KAT6BQ8WYB5 2073 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 AFF2P51816 1311 aa13.34□□□□□ -0.27
SKA2-204ENST00000578519 RTL9Q8NET4 1388 aa13.33□□□□□ -0.27
SKA2-204ENST00000578519 AK9Q5TCS8 1911 aa13.33□□□□□ -0.28
SKA2-204ENST00000578519 FRAT2O75474 233 aaPredicted RBP13.33□□□□□ -0.28
SKA2-204ENST00000578519 SLC5A1P13866 664 aa13.33□□□□□ -0.28
SKA2-204ENST00000578519 DDIT3P35638 169 aa13.33□□□□□ -0.28
SKA2-204ENST00000578519 RAB3GAP1Q15042 981 aa13.33□□□□□ -0.28
SKA2-204ENST00000578519 SKOR2Q2VWA4 1001 aaPredicted RBP13.33□□□□□ -0.28
SKA2-204ENST00000578519 LPIN2Q92539 896 aa13.33□□□□□ -0.28
SKA2-204ENST00000578519 XAGE2Q96GT9 111 aa13.33□□□□□ -0.28
SKA2-204ENST00000578519 GREM2Q9H772 168 aa13.33□□□□□ -0.28
SKA2-204ENST00000578519 RTCBQ9Y3I0 505 aaKnown RBP13.33□□□□□ -0.28
SKA2-204ENST00000578519 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.33□□□□□ -0.28
SKA2-204ENST00000578519 RBM8AQ9Y5S9 174 aaKnown RBP13.33□□□□□ -0.28
SKA2-204ENST00000578519 GOLIM4O00461 696 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 RNF113AO15541 343 aaKnown RBP13.32□□□□□ -0.28
SKA2-204ENST00000578519 PDE8BO95263 885 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 MCM4P33991 863 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 HSPA1LP34931 641 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 CUL4AQ13619 759 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 NECTIN1Q15223 517 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 PUM3Q15397 648 aaKnown RBP13.32□□□□□ -0.28
SKA2-204ENST00000578519 TSGA10IPQ3SY00 556 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 VPS53Q5VIR6 699 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 PRPF40BQ6NWY9 871 aaKnown RBP13.32□□□□□ -0.28
SKA2-204ENST00000578519 PIP4P2Q8N4L2 257 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 PUS3Q9BZE2 481 aaKnown RBP13.32□□□□□ -0.28
SKA2-204ENST00000578519 SH2B1Q9NRF2 756 aaPredicted RBP13.32□□□□□ -0.28
SKA2-204ENST00000578519 CCNL1Q9UK58 526 aaPredicted RBP13.32□□□□□ -0.28
SKA2-204ENST00000578519 LIMCH1Q9UPQ0 1083 aa13.32□□□□□ -0.28
SKA2-204ENST00000578519 HMGB1P09429 215 aaKnown RBP13.31□□□□□ -0.28
SKA2-204ENST00000578519 CREB3L3Q68CJ9 461 aa13.31□□□□□ -0.28
SKA2-204ENST00000578519 TMX3Q96JJ7 454 aa13.31□□□□□ -0.28
SKA2-204ENST00000578519 FAM227BQ96M60 508 aa13.31□□□□□ -0.28
SKA2-204ENST00000578519 PDRG1Q9NUG6 133 aa13.31□□□□□ -0.28
SKA2-204ENST00000578519 NARFQ9UHQ1 456 aa13.31□□□□□ -0.28
SKA2-204ENST00000578519 CTNNA3Q9UI47 895 aa13.31□□□□□ -0.28
SKA2-204ENST00000578519 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.31□□□□□ -0.28
SKA2-204ENST00000578519 UBN2Q6ZU65 1347 aa13.31□□□□□ -0.28
SKA2-204ENST00000578519 RREB1Q92766 1687 aa13.31□□□□□ -0.28
SKA2-204ENST00000578519 ANKRD36CQ5JPF3 1778 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 TAF5LO75529 589 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 CD2BP2O95400 341 aaKnown RBP13.3□□□□□ -0.28
SKA2-204ENST00000578519 NTSR2O95665 410 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 BLOC1S2Q6QNY1 142 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 TPTE2Q6XPS3 522 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 FAM196AQ6ZSG2 479 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 DDX46Q7L014 1031 aaKnown RBP13.3□□□□□ -0.28
SKA2-204ENST00000578519 SEPT12Q8IYM1 358 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 LINC00116Q8NCU8 138 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 JAKMIP1Q96N16 626 aaKnown RBP13.3□□□□□ -0.28
SKA2-204ENST00000578519 CCDC85AQ96PX6 553 aaPredicted RBP13.3□□□□□ -0.28
SKA2-204ENST00000578519 SETDB2Q96T68 719 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 DSCC1Q9BVC3 393 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 BCL11BQ9C0K0 894 aaPredicted RBP13.3□□□□□ -0.28
SKA2-204ENST00000578519 ALDH8A1Q9H2A2 487 aaPredicted RBP13.3□□□□□ -0.28
SKA2-204ENST00000578519 QTRT2Q9H974 415 aaKnown RBP13.3□□□□□ -0.28
SKA2-204ENST00000578519 ZSWIM6Q9HCJ5 1215 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 PALD1Q9ULE6 856 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 MED23Q9ULK4 1368 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 ATRNO75882 1429 aa13.3□□□□□ -0.28
SKA2-204ENST00000578519 A0A0D9SFI3 127 aa13.29□□□□□ -0.28
SKA2-204ENST00000578519 SLC27A2O14975 620 aa13.29□□□□□ -0.28
SKA2-204ENST00000578519 CASTP20810 708 aaKnown RBP13.29□□□□□ -0.28
SKA2-204ENST00000578519 FKBP4Q02790 459 aaKnown RBP eCLIP13.29□□□□□ -0.28
SKA2-204ENST00000578519 PTH1RQ03431 593 aa13.29□□□□□ -0.28
SKA2-204ENST00000578519 SF3B3Q15393 1217 aaKnown RBP13.29□□□□□ -0.28
SKA2-204ENST00000578519 SLC10A5Q5PT55 438 aa13.29□□□□□ -0.28
SKA2-204ENST00000578519 ZMYM1Q5SVZ6 1142 aa13.29□□□□□ -0.28
SKA2-204ENST00000578519 USPL1Q5W0Q7 1092 aa13.29□□□□□ -0.28
SKA2-204ENST00000578519 RUFY3Q7L099 469 aa13.29□□□□□ -0.28
SKA2-204ENST00000578519 ANKRD18AQ8IVF6 992 aa13.29□□□□□ -0.28
SKA2-204ENST00000578519 FOXD4L1Q9NU39 408 aa13.29□□□□□ -0.28
SKA2-204ENST00000578519 SPEF2Q9C093 1822 aa13.28□□□□□ -0.28
SKA2-204ENST00000578519 FAM177BA6PVY3 158 aa13.28□□□□□ -0.28
SKA2-204ENST00000578519 MYCNP04198 464 aaPredicted RBP13.28□□□□□ -0.28
SKA2-204ENST00000578519 HCLS1P14317 486 aaPredicted RBP13.28□□□□□ -0.28
SKA2-204ENST00000578519 SLC27A3Q5K4L6 730 aa13.28□□□□□ -0.28
SKA2-204ENST00000578519 TRAPPC3LQ5T215 181 aa13.28□□□□□ -0.28
SKA2-204ENST00000578519 CLEC17AQ6ZS10 378 aa13.28□□□□□ -0.28
SKA2-204ENST00000578519 TNPO1Q92973 898 aaKnown RBP13.28□□□□□ -0.28
SKA2-204ENST00000578519 NLRP3Q96P20 1036 aa13.28□□□□□ -0.28
SKA2-204ENST00000578519 UPF3BQ9BZI7 483 aaKnown RBP13.28□□□□□ -0.28
SKA2-204ENST00000578519 GNL3LQ9NVN8 582 aaKnown RBP13.28□□□□□ -0.28
SKA2-204ENST00000578519 THSD7AQ9UPZ6 1657 aa13.28□□□□□ -0.28
SKA2-204ENST00000578519 NUP98P52948 1817 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms