RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 ECE2O60344 883 aa19.69■□□□□ 0.74
SF3B3-215ENST00000577085 DOK7Q18PE1 504 aa19.69■□□□□ 0.74
SF3B3-215ENST00000577085 SLC4A10Q6U841 1118 aa19.69■□□□□ 0.74
SF3B3-215ENST00000577085 CREBZFQ9NS37 354 aa19.69■□□□□ 0.74
SF3B3-215ENST00000577085 XDHP47989 1333 aa19.69■□□□□ 0.74
SF3B3-215ENST00000577085 COL4A1P02462 1669 aa19.68■□□□□ 0.74
SF3B3-215ENST00000577085 YDJCA8MPS7 323 aa19.68■□□□□ 0.74
SF3B3-215ENST00000577085 GPR101Q96P66 508 aaPredicted RBP19.68■□□□□ 0.74
SF3B3-215ENST00000577085 BSDC1Q9NW68 430 aaPredicted RBP19.68■□□□□ 0.74
SF3B3-215ENST00000577085 RTL9Q8NET4 1388 aa19.68■□□□□ 0.74
SF3B3-215ENST00000577085 H7C1D1 291 aa19.67■□□□□ 0.74
SF3B3-215ENST00000577085 ATP2B4P23634 1241 aa19.67■□□□□ 0.74
SF3B3-215ENST00000577085 MPHOSPH8Q99549 860 aa19.67■□□□□ 0.74
SF3B3-215ENST00000577085 PLA2G12BQ9BX93 195 aa19.67■□□□□ 0.74
SF3B3-215ENST00000577085 C9orf78Q9NZ63 289 aaPredicted RBP19.67■□□□□ 0.74
SF3B3-215ENST00000577085 CHMP3Q9Y3E7 222 aa19.67■□□□□ 0.74
SF3B3-215ENST00000577085 TMEM88BA6NKF7 163 aa19.66■□□□□ 0.74
SF3B3-215ENST00000577085 ITGBL1O95965 494 aaPredicted RBP19.66■□□□□ 0.74
SF3B3-215ENST00000577085 ITGA6P23229 1130 aa19.66■□□□□ 0.74
SF3B3-215ENST00000577085 BEND3Q5T5X7 828 aa19.66■□□□□ 0.74
SF3B3-215ENST00000577085 PASKQ96RG2 1323 aa19.66■□□□□ 0.74
SF3B3-215ENST00000577085 MYH3P11055 1940 aa19.66■□□□□ 0.74
SF3B3-215ENST00000577085 LTBP1Q14766 1721 aa19.65■□□□□ 0.74
SF3B3-215ENST00000577085 PSMD14O00487 310 aa19.65■□□□□ 0.74
SF3B3-215ENST00000577085 FAM161AQ3B820 660 aa19.65■□□□□ 0.74
SF3B3-215ENST00000577085 CNOT7Q9UIV1 285 aaKnown RBP19.65■□□□□ 0.74
SF3B3-215ENST00000577085 ANKRD18BA2A2Z9 1011 aa19.64■□□□□ 0.73
SF3B3-215ENST00000577085 CASP7P55210 303 aa19.64■□□□□ 0.73
SF3B3-215ENST00000577085 SLFN5Q08AF3 891 aa19.64■□□□□ 0.73
SF3B3-215ENST00000577085 IFIT5Q13325 482 aaKnown RBP19.64■□□□□ 0.73
SF3B3-215ENST00000577085 MICALL2Q8IY33 904 aa19.64■□□□□ 0.73
SF3B3-215ENST00000577085 SRCIN1Q9C0H9 1055 aa19.64■□□□□ 0.73
SF3B3-215ENST00000577085 MINPP1Q9UNW1 487 aa19.64■□□□□ 0.73
SF3B3-215ENST00000577085 ZBTB12Q9Y330 459 aaPredicted RBP19.64■□□□□ 0.73
SF3B3-215ENST00000577085 ADAMTSL1Q8N6G6 1762 aa19.64■□□□□ 0.73
SF3B3-215ENST00000577085 GRM8O00222 908 aa19.63■□□□□ 0.73
SF3B3-215ENST00000577085 ALDH1L1O75891 902 aa19.63■□□□□ 0.73
SF3B3-215ENST00000577085 RPS12P25398 132 aaKnown RBP19.63■□□□□ 0.73
SF3B3-215ENST00000577085 DPF2Q92785 391 aa19.63■□□□□ 0.73
SF3B3-215ENST00000577085 ANKRD2Q9GZV1 360 aa19.63■□□□□ 0.73
SF3B3-215ENST00000577085 MKRN1Q9UHC7 482 aaKnown RBP19.63■□□□□ 0.73
SF3B3-215ENST00000577085 CSF1RP07333 972 aa19.62■□□□□ 0.73
SF3B3-215ENST00000577085 KCNJ4P48050 445 aa19.62■□□□□ 0.73
SF3B3-215ENST00000577085 TAF7LQ5H9L4 462 aa19.62■□□□□ 0.73
SF3B3-215ENST00000577085 JMYQ8N9B5 988 aa19.62■□□□□ 0.73
SF3B3-215ENST00000577085 PTPRCP08575 1304 aa19.61■□□□□ 0.73
SF3B3-215ENST00000577085 CCT4P50991 539 aaKnown RBP19.61■□□□□ 0.73
SF3B3-215ENST00000577085 MRPL50Q8N5N7 158 aaKnown RBP19.61■□□□□ 0.73
SF3B3-215ENST00000577085 CDCA7LQ96GN5 454 aa19.61■□□□□ 0.73
SF3B3-215ENST00000577085 KCNQ5Q9NR82 932 aa19.61■□□□□ 0.73
SF3B3-215ENST00000577085 ABT1Q9ULW3 272 aaKnown RBP19.61■□□□□ 0.73
SF3B3-215ENST00000577085 SPEF2Q9C093 1822 aa19.6■□□□□ 0.73
SF3B3-215ENST00000577085 CCDC57Q2TAC2 916 aa19.6■□□□□ 0.73
SF3B3-215ENST00000577085 PODNQ7Z5L7 613 aa19.6■□□□□ 0.73
SF3B3-215ENST00000577085 ZC3H15Q8WU90 426 aaKnown RBP19.6■□□□□ 0.73
SF3B3-215ENST00000577085 LEMD3Q9Y2U8 911 aa19.6■□□□□ 0.73
SF3B3-215ENST00000577085 MED23Q9ULK4 1368 aa19.59■□□□□ 0.73
SF3B3-215ENST00000577085 FOXO4P98177 505 aa19.59■□□□□ 0.73
SF3B3-215ENST00000577085 LMBR1LQ6UX01 489 aa19.59■□□□□ 0.73
SF3B3-215ENST00000577085 SSH1Q8WYL5 1049 aa19.59■□□□□ 0.73
SF3B3-215ENST00000577085 SMC4Q9NTJ3 1288 aa19.59■□□□□ 0.73
SF3B3-215ENST00000577085 VIL1P09327 827 aaKnown RBP19.58■□□□□ 0.72
SF3B3-215ENST00000577085 RBM26Q5T8P6 1007 aaKnown RBP19.58■□□□□ 0.72
SF3B3-215ENST00000577085 TRPM4Q8TD43 1214 aa19.58■□□□□ 0.72
SF3B3-215ENST00000577085 FBXW7Q969H0 707 aa19.58■□□□□ 0.72
SF3B3-215ENST00000577085 CNTNAP1P78357 1384 aa19.57■□□□□ 0.72
SF3B3-215ENST00000577085 ZNF804BA4D1E1 1349 aa19.57■□□□□ 0.72
SF3B3-215ENST00000577085 SHTN1A0MZ66 631 aa19.57■□□□□ 0.72
SF3B3-215ENST00000577085 USP17L3A6NCW0 530 aa19.57■□□□□ 0.72
SF3B3-215ENST00000577085 USP17L4A6NCW7 530 aa19.57■□□□□ 0.72
SF3B3-215ENST00000577085 ALDH1L2Q3SY69 923 aa19.57■□□□□ 0.72
SF3B3-215ENST00000577085 TBC1D10BQ4KMP7 808 aaPredicted RBP19.57■□□□□ 0.72
SF3B3-215ENST00000577085 DIEXFQ68CQ4 756 aaKnown RBP19.57■□□□□ 0.72
SF3B3-215ENST00000577085 USP17L1Q7RTZ2 530 aa19.57■□□□□ 0.72
SF3B3-215ENST00000577085 SAMD7Q7Z3H4 446 aa19.57■□□□□ 0.72
SF3B3-215ENST00000577085 TRAF5O00463 557 aa19.56■□□□□ 0.72
SF3B3-215ENST00000577085 CHRNDQ07001 517 aa19.56■□□□□ 0.72
SF3B3-215ENST00000577085 DEFB115Q30KQ5 88 aa19.56■□□□□ 0.72
SF3B3-215ENST00000577085 RSBN1LQ6PCB5 846 aaPredicted RBP19.56■□□□□ 0.72
SF3B3-215ENST00000577085 PAXIP1Q6ZW49 1069 aaPredicted RBP19.56■□□□□ 0.72
SF3B3-215ENST00000577085 CDC37L1Q7L3B6 337 aa19.56■□□□□ 0.72
SF3B3-215ENST00000577085 AGBL3Q8NEM8 1001 aa19.56■□□□□ 0.72
SF3B3-215ENST00000577085 COA1Q9GZY4 146 aa19.56■□□□□ 0.72
SF3B3-215ENST00000577085 CT47B1P0C2W7 299 aaPredicted RBP19.55■□□□□ 0.72
SF3B3-215ENST00000577085 HIRAP54198 1017 aaPredicted RBP19.55■□□□□ 0.72
SF3B3-215ENST00000577085 KIF4BQ2VIQ3 1234 aa19.55■□□□□ 0.72
SF3B3-215ENST00000577085 LDHAL6AQ6ZMR3 332 aa19.55■□□□□ 0.72
SF3B3-215ENST00000577085 DCPSQ96C86 337 aaKnown RBP19.55■□□□□ 0.72
SF3B3-215ENST00000577085 GLIS2Q9BZE0 524 aaPredicted RBP19.55■□□□□ 0.72
SF3B3-215ENST00000577085 ZNF408Q9H9D4 720 aa19.55■□□□□ 0.72
SF3B3-215ENST00000577085 CNNM1Q9NRU3 951 aa19.55■□□□□ 0.72
SF3B3-215ENST00000577085 WTIPA6NIX2 430 aaPredicted RBP19.54■□□□□ 0.72
SF3B3-215ENST00000577085 EPHA10Q5JZY3 1008 aa19.54■□□□□ 0.72
SF3B3-215ENST00000577085 PGAP2Q9UHJ9 254 aa19.54■□□□□ 0.72
SF3B3-215ENST00000577085 TAF5LO75529 589 aa19.53■□□□□ 0.72
SF3B3-215ENST00000577085 CELF2O95319 508 aaKnown RBP19.53■□□□□ 0.72
SF3B3-215ENST00000577085 NBPF7P0C2Y1 421 aaPredicted RBP19.53■□□□□ 0.72
SF3B3-215ENST00000577085 USP17L8P0C7I0 530 aa19.53■□□□□ 0.72
SF3B3-215ENST00000577085 FMR1Q06787 632 aaKnown RBP eCLIP19.53■□□□□ 0.721e-6■■□□□ 12.6
SF3B3-215ENST00000577085 PLIN1O60240 522 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms