RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FAM135AQ9P2D6 1515 aa8.6□□□□□ -1.03
VPS53-212ENST00000572259 CROCC2H7BZ55 1655 aa8.6□□□□□ -1.03
VPS53-212ENST00000572259 C3P01024 1663 aa8.6□□□□□ -1.03
VPS53-212ENST00000572259 C11orf95C9JLR9 678 aaPredicted RBP8.6□□□□□ -1.03
VPS53-212ENST00000572259 ABTB2Q8N961 1025 aa8.6□□□□□ -1.03
VPS53-212ENST00000572259 UHRF1BP1Q6BDS2 1440 aa8.6□□□□□ -1.03
VPS53-212ENST00000572259 CFAP65Q6ZU64 1925 aaKnown RBP8.6□□□□□ -1.03
VPS53-212ENST00000572259 CLTCQ00610 1675 aaKnown RBP8.59□□□□□ -1.03
VPS53-212ENST00000572259 EIF2AK4Q9P2K8 1649 aaKnown RBP8.59□□□□□ -1.03
VPS53-212ENST00000572259 MPSTP25325 297 aa8.59□□□□□ -1.03
VPS53-212ENST00000572259 ITGAEP38570 1179 aa8.59□□□□□ -1.03
VPS53-212ENST00000572259 PTSQ03393 145 aa8.59□□□□□ -1.03
VPS53-212ENST00000572259 NOM1Q5C9Z4 860 aaKnown RBP8.59□□□□□ -1.03
VPS53-212ENST00000572259 ALKBH2Q6NS38 261 aa8.59□□□□□ -1.03
VPS53-212ENST00000572259 RIPOR1Q6ZS17 1223 aa8.59□□□□□ -1.03
VPS53-212ENST00000572259 NPATQ14207 1427 aa8.59□□□□□ -1.03
VPS53-212ENST00000572259 NCOA1Q15788 1441 aa8.59□□□□□ -1.03
VPS53-212ENST00000572259 ERBINQ96RT1 1412 aa8.59□□□□□ -1.03
VPS53-212ENST00000572259 PREX1Q8TCU6 1659 aa8.59□□□□□ -1.03
VPS53-212ENST00000572259 TNFRSF10BO14763 440 aa8.58□□□□□ -1.04
VPS53-212ENST00000572259 ATP4AP20648 1035 aa8.58□□□□□ -1.04
VPS53-212ENST00000572259 SUSD3Q96L08 255 aa8.58□□□□□ -1.04
VPS53-212ENST00000572259 ZIC5Q96T25 663 aa8.58□□□□□ -1.04
VPS53-212ENST00000572259 RUBCNLQ9H714 662 aa8.58□□□□□ -1.04
VPS53-212ENST00000572259 A0A1W2PNR3 127 aa8.57□□□□□ -1.04
VPS53-212ENST00000572259 NPR3P17342 541 aa8.57□□□□□ -1.04
VPS53-212ENST00000572259 EFHC2Q5JST6 749 aa8.57□□□□□ -1.04
VPS53-212ENST00000572259 LRRC69Q6ZNQ3 347 aa8.57□□□□□ -1.04
VPS53-212ENST00000572259 KDM5DQ9BY66 1539 aa8.57□□□□□ -1.04
VPS53-212ENST00000572259 ADGRL2O95490 1459 aa8.57□□□□□ -1.04
VPS53-212ENST00000572259 SENP3-EIF4A1A0A087X0R7 540 aa8.56□□□□□ -1.04
VPS53-212ENST00000572259 SNRPBP14678 240 aaKnown RBP8.56□□□□□ -1.04
VPS53-212ENST00000572259 EIF1AXP47813 144 aaKnown RBP8.56□□□□□ -1.04
VPS53-212ENST00000572259 HSPA2P54652 639 aa8.56□□□□□ -1.04
VPS53-212ENST00000572259 C7orf43Q8WVR3 580 aa8.56□□□□□ -1.04
VPS53-212ENST00000572259 ROCK1Q13464 1354 aa8.56□□□□□ -1.04
VPS53-212ENST00000572259 LMTK3Q96Q04 1460 aa8.56□□□□□ -1.04
VPS53-212ENST00000572259 ANKRD50Q9ULJ7 1429 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 RNF17Q9BXT8 1623 aaKnown RBP8.55□□□□□ -1.04
VPS53-212ENST00000572259 SLC35F4A4IF30 521 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 TGFBR3LH3BV60 316 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 H7C1W4 665 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 MARSP56192 900 aaKnown RBP8.55□□□□□ -1.04
VPS53-212ENST00000572259 TREML1Q86YW5 311 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 ETFBKMTQ8IXQ9 262 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 CCDC155Q8N6L0 562 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 ZNF280CQ8ND82 737 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 HSH2DQ96JZ2 352 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 CRISPLD1Q9H336 500 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 FAM13BQ9NYF5 915 aa8.55□□□□□ -1.04
VPS53-212ENST00000572259 ZC3H13Q5T200 1668 aaKnown RBP8.55□□□□□ -1.04
VPS53-212ENST00000572259 PTPRKQ15262 1439 aa8.54□□□□□ -1.04
VPS53-212ENST00000572259 RRBP1Q9P2E9 1410 aaKnown RBP8.54□□□□□ -1.04
VPS53-212ENST00000572259 MICAL2O94851 1124 aa8.54□□□□□ -1.04
VPS53-212ENST00000572259 NCLP19338 710 aaKnown RBP8.54□□□□□ -1.04
VPS53-212ENST00000572259 NLRP8Q86W28 1048 aa8.54□□□□□ -1.04
VPS53-212ENST00000572259 SPATA32Q96LK8 384 aa8.54□□□□□ -1.04
VPS53-212ENST00000572259 BRPF3Q9ULD4 1205 aa8.54□□□□□ -1.04
VPS53-212ENST00000572259 PZPP20742 1482 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 TNRQ92752 1358 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 ZBTB39O15060 712 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 NDUFB5O43674 189 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 MAPK1P28482 360 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 ZAP70P43403 619 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 ARHGAP4P98171 946 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 IER5Q5VY09 327 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 THEMISQ8N1K5 641 aaPredicted RBP8.53□□□□□ -1.04
VPS53-212ENST00000572259 DRC1Q96MC2 740 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 NUCKS1Q9H1E3 243 aaKnown RBP8.53□□□□□ -1.04
VPS53-212ENST00000572259 CWC22Q9HCG8 908 aaKnown RBP8.53□□□□□ -1.04
VPS53-212ENST00000572259 BCS1LQ9Y276 419 aa8.53□□□□□ -1.04
VPS53-212ENST00000572259 DNM1Q05193 864 aaKnown RBP8.52□□□□□ -1.05
VPS53-212ENST00000572259 LBRQ14739 615 aaKnown RBP8.52□□□□□ -1.05
VPS53-212ENST00000572259 ECM1Q16610 540 aa8.52□□□□□ -1.05
VPS53-212ENST00000572259 FIGNL1Q6PIW4 674 aa8.52□□□□□ -1.05
VPS53-212ENST00000572259 BTLAQ7Z6A9 289 aa8.52□□□□□ -1.05
VPS53-212ENST00000572259 TTC16Q8NEE8 873 aa8.52□□□□□ -1.05
VPS53-212ENST00000572259 TMC1Q8TDI8 760 aa8.52□□□□□ -1.05
VPS53-212ENST00000572259 KLRG1Q96E93 195 aa8.52□□□□□ -1.05
VPS53-212ENST00000572259 CEP63Q96MT8 703 aa8.52□□□□□ -1.05
VPS53-212ENST00000572259 C8orf37Q96NL8 207 aa8.52□□□□□ -1.05
VPS53-212ENST00000572259 DCTN4Q9UJW0 460 aa8.52□□□□□ -1.05
VPS53-212ENST00000572259 CEP152O94986 1710 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 ABCC3O15438 1527 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 PCSK2P16519 638 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 ERCC3P19447 782 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 IDH3AP50213 366 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 FAM26DQ5JW98 314 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 ATCAYQ86WG3 371 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 UBE2Q2Q8WVN8 375 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 SREK1Q8WXA9 508 aaKnown RBP8.51□□□□□ -1.05
VPS53-212ENST00000572259 MRRFQ96E11 262 aaKnown RBP8.51□□□□□ -1.05
VPS53-212ENST00000572259 ARHGAP31Q2M1Z3 1444 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 NLRP1Q9C000 1473 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 DEPDC5O75140 1603 aa8.51□□□□□ -1.05
VPS53-212ENST00000572259 PRDM15P57071 1507 aaPredicted RBP8.5□□□□□ -1.05
VPS53-212ENST00000572259 ITGA6P23229 1130 aa8.5□□□□□ -1.05
VPS53-212ENST00000572259 ARSDP51689 593 aa8.5□□□□□ -1.05
VPS53-212ENST00000572259 TRIM22Q8IYM9 498 aa8.5□□□□□ -1.05
VPS53-212ENST00000572259 ANKRD13AQ8IZ07 590 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms