RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 UTYO14607 1347 aa25.92■■□□□ 1.74
VPS53-210ENST00000571456 LTBP1Q14766 1721 aa25.92■■□□□ 1.74
VPS53-210ENST00000571456 PDE8AO60658 829 aa25.92■■□□□ 1.74
VPS53-210ENST00000571456 NPR1P16066 1061 aa25.92■■□□□ 1.74
VPS53-210ENST00000571456 GPC2Q8N158 579 aa25.92■■□□□ 1.74
VPS53-210ENST00000571456 PLA2G12BQ9BX93 195 aa25.92■■□□□ 1.74
VPS53-210ENST00000571456 FZD9O00144 591 aa25.91■■□□□ 1.74
VPS53-210ENST00000571456 SF3B3Q15393 1217 aaKnown RBP25.91■■□□□ 1.74
VPS53-210ENST00000571456 DZIP1LQ8IYY4 767 aaKnown RBP25.91■■□□□ 1.74
VPS53-210ENST00000571456 ALDH1B1P30837 517 aa25.9■■□□□ 1.74
VPS53-210ENST00000571456 HOXA10P31260 410 aaPredicted RBP25.9■■□□□ 1.74
VPS53-210ENST00000571456 MAP2K2P36507 400 aa25.9■■□□□ 1.74
VPS53-210ENST00000571456 UBE3BQ7Z3V4 1068 aa25.9■■□□□ 1.74
VPS53-210ENST00000571456 RTKN2Q8IZC4 609 aa25.9■■□□□ 1.74
VPS53-210ENST00000571456 RPGRQ92834 1020 aaKnown RBP25.9■■□□□ 1.74
VPS53-210ENST00000571456 CA12O43570 354 aa25.89■■□□□ 1.74
VPS53-210ENST00000571456 CASP7P55210 303 aa25.89■■□□□ 1.74
VPS53-210ENST00000571456 HCLS1P14317 486 aaPredicted RBP25.88■■□□□ 1.73
VPS53-210ENST00000571456 FMR1Q06787 632 aaKnown RBP eCLIP25.88■■□□□ 1.732e-18■■■■■ 64.9
VPS53-210ENST00000571456 RBM17Q96I25 401 aaKnown RBP25.88■■□□□ 1.73
VPS53-210ENST00000571456 IARSP41252 1262 aaKnown RBP25.87■■□□□ 1.73
VPS53-210ENST00000571456 PDE3AQ14432 1141 aa25.87■■□□□ 1.73
VPS53-210ENST00000571456 CCDC152Q4G0S7 254 aa25.87■■□□□ 1.73
VPS53-210ENST00000571456 CRAMP1Q96RY5 1269 aa25.87■■□□□ 1.73
VPS53-210ENST00000571456 AOC2O75106 756 aa25.86■■□□□ 1.73
VPS53-210ENST00000571456 CST9Q5W186 159 aa25.86■■□□□ 1.73
VPS53-210ENST00000571456 OLFM4Q6UX06 510 aa25.86■■□□□ 1.73
VPS53-210ENST00000571456 SYNE4Q8N205 404 aa25.86■■□□□ 1.73
VPS53-210ENST00000571456 CHMP4BQ9H444 224 aaKnown RBP25.86■■□□□ 1.73
VPS53-210ENST00000571456 TLL2Q9Y6L7 1015 aa25.86■■□□□ 1.73
VPS53-210ENST00000571456 RTL9Q8NET4 1388 aa25.85■■□□□ 1.73
VPS53-210ENST00000571456 GNAI3P08754 354 aa25.85■■□□□ 1.73
VPS53-210ENST00000571456 RTL5Q5HYW3 569 aaPredicted RBP25.85■■□□□ 1.73
VPS53-210ENST00000571456 CLUAP1Q96AJ1 413 aa25.85■■□□□ 1.73
VPS53-210ENST00000571456 USP44Q9H0E7 712 aa25.85■■□□□ 1.73
VPS53-210ENST00000571456 LMOD1P29536 600 aaPredicted RBP25.84■■□□□ 1.73
VPS53-210ENST00000571456 CTSWP56202 376 aa25.84■■□□□ 1.73
VPS53-210ENST00000571456 DGKZQ13574 1117 aa25.84■■□□□ 1.73
VPS53-210ENST00000571456 DDX46Q7L014 1031 aaKnown RBP25.84■■□□□ 1.73
VPS53-210ENST00000571456 TMC4Q7Z404 712 aa25.84■■□□□ 1.73
VPS53-210ENST00000571456 JDP2Q8WYK2 163 aa25.83■■□□□ 1.73
VPS53-210ENST00000571456 TRAF5O00463 557 aa25.82■■□□□ 1.72
VPS53-210ENST00000571456 UBTFL1P0CB47 393 aaPredicted RBP25.82■■□□□ 1.72
VPS53-210ENST00000571456 TMEM57Q8N5G2 664 aa25.82■■□□□ 1.72
VPS53-210ENST00000571456 GJA3Q9Y6H8 435 aa25.82■■□□□ 1.72
VPS53-210ENST00000571456 CSF1RP07333 972 aa25.81■■□□□ 1.72
VPS53-210ENST00000571456 NBPF7P0C2Y1 421 aaPredicted RBP25.81■■□□□ 1.72
VPS53-210ENST00000571456 GRIPAP1Q4V328 841 aa25.81■■□□□ 1.72
VPS53-210ENST00000571456 TTLL11Q8NHH1 800 aa25.81■■□□□ 1.72
VPS53-210ENST00000571456 BBOX1O75936 387 aa25.8■■□□□ 1.72
VPS53-210ENST00000571456 EIF6P56537 245 aaKnown RBP25.8■■□□□ 1.72
VPS53-210ENST00000571456 CC2D2BQ6DHV5 1058 aa25.8■■□□□ 1.72
VPS53-210ENST00000571456 EPS15P42566 896 aa25.79■■□□□ 1.72
VPS53-210ENST00000571456 C3orf67Q6ZVT6 689 aa25.79■■□□□ 1.72
VPS53-210ENST00000571456 JARID2Q92833 1246 aaPredicted RBP25.79■■□□□ 1.72
VPS53-210ENST00000571456 TMX4Q9H1E5 349 aaPredicted RBP25.79■■□□□ 1.72
VPS53-210ENST00000571456 DDX19BQ9UMR2 479 aa25.79■■□□□ 1.72
VPS53-210ENST00000571456 SCNN1DP51172 638 aa25.78■■□□□ 1.72
VPS53-210ENST00000571456 RRP1P56182 461 aaKnown RBP25.78■■□□□ 1.72
VPS53-210ENST00000571456 GRAPQ13588 217 aa25.78■■□□□ 1.72
VPS53-210ENST00000571456 USP50Q70EL3 339 aaPredicted RBP25.78■■□□□ 1.72
VPS53-210ENST00000571456 ITPRIPQ8IWB1 547 aa25.78■■□□□ 1.72
VPS53-210ENST00000571456 GRAPLQ8TC17 118 aaPredicted RBP25.78■■□□□ 1.72
VPS53-210ENST00000571456 CDC5LQ99459 802 aaKnown RBP25.78■■□□□ 1.72
VPS53-210ENST00000571456 PSMD1Q99460 953 aa25.78■■□□□ 1.72
VPS53-210ENST00000571456 RABL6Q3YEC7 729 aaPredicted RBP25.77■■□□□ 1.72
VPS53-210ENST00000571456 SAPCD2Q86UD0 394 aa25.77■■□□□ 1.72
VPS53-210ENST00000571456 TNNQ9UQP3 1299 aa25.77■■□□□ 1.72
VPS53-210ENST00000571456 RLBP1P12271 317 aa25.76■■□□□ 1.71
VPS53-210ENST00000571456 FOXO4P98177 505 aa25.76■■□□□ 1.71
VPS53-210ENST00000571456 MVPQ14764 893 aaKnown RBP25.76■■□□□ 1.71
VPS53-210ENST00000571456 COL4A5P29400 1685 aa25.75■■□□□ 1.71
VPS53-210ENST00000571456 SUCLG2Q96I99 432 aa25.75■■□□□ 1.71
VPS53-210ENST00000571456 HHIPL1Q96JK4 782 aa25.75■■□□□ 1.71
VPS53-210ENST00000571456 SNED1Q8TER0 1413 aa25.74■■□□□ 1.71
VPS53-210ENST00000571456 PLIN1O60240 522 aa25.74■■□□□ 1.71
VPS53-210ENST00000571456 PANK1Q8TE04 598 aa25.74■■□□□ 1.71
VPS53-210ENST00000571456 MEIS3Q99687 375 aa25.74■■□□□ 1.71
VPS53-210ENST00000571456 ANKRD18BA2A2Z9 1011 aa25.73■■□□□ 1.71
VPS53-210ENST00000571456 PPEF1O14829 653 aaPredicted RBP25.73■■□□□ 1.71
VPS53-210ENST00000571456 ZBTB7BO15156 539 aaPredicted RBP25.73■■□□□ 1.71
VPS53-210ENST00000571456 GNAI2P04899 355 aa25.73■■□□□ 1.71
VPS53-210ENST00000571456 RPS8P62241 208 aaKnown RBP25.73■■□□□ 1.71
VPS53-210ENST00000571456 IFIT5Q13325 482 aaKnown RBP25.73■■□□□ 1.71
VPS53-210ENST00000571456 LMBR1LQ6UX01 489 aa25.73■■□□□ 1.71
VPS53-210ENST00000571456 KAZALD1Q96I82 304 aa25.73■■□□□ 1.71
VPS53-210ENST00000571456 CELF2O95319 508 aaKnown RBP25.72■■□□□ 1.71
VPS53-210ENST00000571456 CCDC57Q2TAC2 916 aa25.72■■□□□ 1.71
VPS53-210ENST00000571456 PRPF38BQ5VTL8 546 aaKnown RBP25.72■■□□□ 1.71
VPS53-210ENST00000571456 CIAPIN1Q6FI81 312 aa25.72■■□□□ 1.71
VPS53-210ENST00000571456 ANKRD18AQ8IVF6 992 aa25.72■■□□□ 1.71
VPS53-210ENST00000571456 BICC1Q9H694 974 aaKnown RBP25.72■■□□□ 1.71
VPS53-210ENST00000571456 GREM2Q9H772 168 aa25.72■■□□□ 1.71
VPS53-210ENST00000571456 ITGA6P23229 1130 aa25.71■■□□□ 1.71
VPS53-210ENST00000571456 SP8Q8IXZ3 490 aa25.71■■□□□ 1.71
VPS53-210ENST00000571456 ATP6V0A2Q9Y487 856 aa25.71■■□□□ 1.71
VPS53-210ENST00000571456 IGHMBP2P38935 993 aaKnown RBP25.7■■□□□ 1.7
VPS53-210ENST00000571456 SOX10P56693 466 aa25.7■■□□□ 1.7
VPS53-210ENST00000571456 EPHA10Q5JZY3 1008 aa25.7■■□□□ 1.7
VPS53-210ENST00000571456 LRRC37AA6NMS7 1700 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms