RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 DCAF5Q96JK2 942 aa7.56□□□□□ -1.2
NUP88-202ENST00000570937 TUT1Q9H6E5 874 aaKnown RBP7.56□□□□□ -1.2
NUP88-202ENST00000570937 TMEM63CQ9P1W3 806 aa7.56□□□□□ -1.2
NUP88-202ENST00000570937 RGS9O75916 674 aaPredicted RBP7.55□□□□□ -1.2
NUP88-202ENST00000570937 KIF4AO95239 1232 aa7.55□□□□□ -1.2
NUP88-202ENST00000570937 AFF1P51825 1210 aaKnown RBP7.55□□□□□ -1.2
NUP88-202ENST00000570937 MLLT1Q03111 559 aaPredicted RBP7.55□□□□□ -1.2
NUP88-202ENST00000570937 AAMPQ13685 434 aa7.55□□□□□ -1.2
NUP88-202ENST00000570937 GRIK5Q16478 980 aa7.55□□□□□ -1.2
NUP88-202ENST00000570937 ZNF438Q7Z4V0 828 aa7.55□□□□□ -1.2
NUP88-202ENST00000570937 GJD3Q8N144 294 aa7.55□□□□□ -1.2
NUP88-202ENST00000570937 PLVAPQ9BX97 442 aa7.55□□□□□ -1.2
NUP88-202ENST00000570937 JPH1Q9HDC5 661 aaPredicted RBP7.55□□□□□ -1.2
NUP88-202ENST00000570937 ABCC9O60706 1549 aa7.55□□□□□ -1.2
NUP88-202ENST00000570937 SPDYE3A6NKU9 549 aa7.54□□□□□ -1.2
NUP88-202ENST00000570937 C8orf34Q49A92 452 aa7.54□□□□□ -1.2
NUP88-202ENST00000570937 TTC16Q8NEE8 873 aa7.54□□□□□ -1.2
NUP88-202ENST00000570937 NUDT8Q8WV74 236 aa7.54□□□□□ -1.2
NUP88-202ENST00000570937 CCDC87Q9NVE4 849 aa7.54□□□□□ -1.2
NUP88-202ENST00000570937 SOWAHDA6NJG2 315 aa7.53□□□□□ -1.2
NUP88-202ENST00000570937 EIF2AK2P19525 551 aaKnown RBP7.53□□□□□ -1.2
NUP88-202ENST00000570937 KCNA1Q09470 495 aa7.53□□□□□ -1.2
NUP88-202ENST00000570937 HYAL2Q12891 473 aa7.53□□□□□ -1.2
NUP88-202ENST00000570937 COL13A1Q5TAT6 717 aaPredicted RBP7.53□□□□□ -1.2
NUP88-202ENST00000570937 ELMSAN1Q6PJG2 1045 aa7.53□□□□□ -1.2
NUP88-202ENST00000570937 HFE2Q6ZVN8 426 aa7.53□□□□□ -1.2
NUP88-202ENST00000570937 NSUN5Q96P11 429 aaKnown RBP7.53□□□□□ -1.2
NUP88-202ENST00000570937 A6NHS1 94 aa7.52□□□□□ -1.21
NUP88-202ENST00000570937 J3QW42 95 aa7.52□□□□□ -1.21
NUP88-202ENST00000570937 GHRHP01286 108 aa7.52□□□□□ -1.21
NUP88-202ENST00000570937 PLD4Q96BZ4 506 aa7.52□□□□□ -1.21
NUP88-202ENST00000570937 SMG9Q9H0W8 520 aaKnown RBP7.52□□□□□ -1.21
NUP88-202ENST00000570937 RBSNQ9H1K0 784 aa7.52□□□□□ -1.21
NUP88-202ENST00000570937 CNTN3Q9P232 1028 aa7.52□□□□□ -1.21
NUP88-202ENST00000570937 KRBA1A5PL33 1030 aa7.51□□□□□ -1.21
NUP88-202ENST00000570937 CYP2E1P05181 493 aaPredicted RBP7.51□□□□□ -1.21
NUP88-202ENST00000570937 GPAT2Q6NUI2 795 aa7.51□□□□□ -1.21
NUP88-202ENST00000570937 C1orf127Q8N9H9 656 aa7.51□□□□□ -1.21
NUP88-202ENST00000570937 PMEPA1Q969W9 287 aa7.51□□□□□ -1.21
NUP88-202ENST00000570937 CITED4Q96RK1 184 aa7.51□□□□□ -1.21
NUP88-202ENST00000570937 CHRDQ9H2X0 955 aa7.51□□□□□ -1.21
NUP88-202ENST00000570937 SALL4Q9UJQ4 1053 aa7.51□□□□□ -1.21
NUP88-202ENST00000570937 BRPF3Q9ULD4 1205 aa7.51□□□□□ -1.21
NUP88-202ENST00000570937 TNFRSF21O75509 655 aa7.5□□□□□ -1.21
NUP88-202ENST00000570937 SPATA31C1P0DKV0 1188 aa7.5□□□□□ -1.21
NUP88-202ENST00000570937 MSL1Q68DK7 614 aa7.5□□□□□ -1.21
NUP88-202ENST00000570937 SNX29Q8TEQ0 813 aa7.5□□□□□ -1.21
NUP88-202ENST00000570937 SPACA7Q96KW9 195 aa7.5□□□□□ -1.21
NUP88-202ENST00000570937 NDUFB5O43674 189 aa7.49□□□□□ -1.21
NUP88-202ENST00000570937 ITGB2P05107 769 aa7.49□□□□□ -1.21
NUP88-202ENST00000570937 PLA2G4EQ3MJ16 856 aa7.49□□□□□ -1.21
NUP88-202ENST00000570937 PRRT3Q5FWE3 981 aa7.49□□□□□ -1.21
NUP88-202ENST00000570937 TRAPPC3LQ5T215 181 aa7.49□□□□□ -1.21
NUP88-202ENST00000570937 CACTIN-AS1Q8N1I8 211 aa7.49□□□□□ -1.21
NUP88-202ENST00000570937 CEP120Q8N960 986 aa7.49□□□□□ -1.21
NUP88-202ENST00000570937 FAM129BQ96TA1 746 aa7.49□□□□□ -1.21
NUP88-202ENST00000570937 A0A0A0MRY4 1105 aa7.48□□□□□ -1.21
NUP88-202ENST00000570937 PATL2C9JE40 543 aaKnown RBP7.48□□□□□ -1.21
NUP88-202ENST00000570937 IGHA1P01876 353 aa7.48□□□□□ -1.21
NUP88-202ENST00000570937 CES1P23141 567 aa7.48□□□□□ -1.21
NUP88-202ENST00000570937 TRIM28Q13263 835 aaKnown RBP7.48□□□□□ -1.21
NUP88-202ENST00000570937 DTWD1Q8N5C7 304 aa7.48□□□□□ -1.21
NUP88-202ENST00000570937 BAG6P46379 1132 aa7.47□□□□□ -1.21
NUP88-202ENST00000570937 PDE3BQ13370 1112 aa7.47□□□□□ -1.21
NUP88-202ENST00000570937 NCAPG2Q86XI2 1143 aa7.47□□□□□ -1.21
NUP88-202ENST00000570937 WFDC8Q8IUA0 241 aa7.47□□□□□ -1.21
NUP88-202ENST00000570937 DMRTC2Q8IXT2 367 aaPredicted RBP7.47□□□□□ -1.21
NUP88-202ENST00000570937 PBX4Q9BYU1 374 aa7.47□□□□□ -1.21
NUP88-202ENST00000570937 KANSL3Q9P2N6 904 aa7.47□□□□□ -1.21
NUP88-202ENST00000570937 FOXD3Q9UJU5 478 aaPredicted RBP7.47□□□□□ -1.21
NUP88-202ENST00000570937 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.47□□□□□ -1.21
NUP88-202ENST00000570937 IVNS1ABPQ9Y6Y0 642 aa7.47□□□□□ -1.21
NUP88-202ENST00000570937 PHACTR2O75167 634 aa7.46□□□□□ -1.22
NUP88-202ENST00000570937 SMNDC1O75940 238 aaKnown RBP eCLIP7.46□□□□□ -1.22
NUP88-202ENST00000570937 IGHA2P01877 340 aa7.46□□□□□ -1.22
NUP88-202ENST00000570937 RAC1P63000 192 aa7.46□□□□□ -1.22
NUP88-202ENST00000570937 ATP11AP98196 1134 aa7.46□□□□□ -1.22
NUP88-202ENST00000570937 RBCK1Q9BYM8 510 aa7.46□□□□□ -1.22
NUP88-202ENST00000570937 RASSF4Q9H2L5 321 aa7.46□□□□□ -1.22
NUP88-202ENST00000570937 ZFYVE28Q9HCC9 887 aa7.46□□□□□ -1.22
NUP88-202ENST00000570937 FAM229AH3BQW9 127 aa7.45□□□□□ -1.22
NUP88-202ENST00000570937 NFKBIEO00221 500 aa7.45□□□□□ -1.22
NUP88-202ENST00000570937 EREGO14944 169 aa7.45□□□□□ -1.22
NUP88-202ENST00000570937 ELNP15502 786 aa7.45□□□□□ -1.22
NUP88-202ENST00000570937 FMR1NBQ8N0W7 255 aaPredicted RBP7.45□□□□□ -1.22
NUP88-202ENST00000570937 TRIM33Q9UPN9 1127 aa7.45□□□□□ -1.22
NUP88-202ENST00000570937 NEFLP07196 543 aa7.44□□□□□ -1.22
NUP88-202ENST00000570937 PDIA4P13667 645 aaKnown RBP7.44□□□□□ -1.22
NUP88-202ENST00000570937 EDN3P14138 238 aa7.44□□□□□ -1.22
NUP88-202ENST00000570937 CEP135Q66GS9 1140 aa7.44□□□□□ -1.22
NUP88-202ENST00000570937 GDF6Q6KF10 455 aaPredicted RBP7.44□□□□□ -1.22
NUP88-202ENST00000570937 CD163Q86VB7 1156 aa7.44□□□□□ -1.22
NUP88-202ENST00000570937 ALKBH8Q96BT7 664 aaKnown RBP7.44□□□□□ -1.22
NUP88-202ENST00000570937 DMRTB1Q96MA1 342 aa7.44□□□□□ -1.22
NUP88-202ENST00000570937 SRA1Q9HD15 236 aaKnown RBP7.44□□□□□ -1.22
NUP88-202ENST00000570937 DZANK1Q9NVP4 752 aa7.44□□□□□ -1.22
NUP88-202ENST00000570937 AMOTL2Q9Y2J4 779 aa7.44□□□□□ -1.22
NUP88-202ENST00000570937 C1QTNF9BB2RNN3 333 aa7.43□□□□□ -1.22
NUP88-202ENST00000570937 MSTNO14793 375 aa7.43□□□□□ -1.22
NUP88-202ENST00000570937 CHRNA4P43681 627 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms