RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 SLC10A5Q5PT55 438 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 SIRT2Q8IXJ6 389 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 EXOC6Q8TAG9 804 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 KLHDC4Q8TBB5 520 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 CELF1Q92879 486 aaKnown RBP8.07□□□□□ -1.12
VPS53-209ENST00000570771 SYT17Q9BSW7 474 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 GREM2Q9H772 168 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 PPP4R2Q9NY27 417 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 PPP1R1BQ9UD71 204 aaPredicted RBP8.07□□□□□ -1.12
VPS53-209ENST00000570771 LRRFIP2Q9Y608 721 aaKnown RBP8.07□□□□□ -1.12
VPS53-209ENST00000570771 COL4A5P29400 1685 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 DLEC1Q9Y238 1755 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 PNMA6EA0A0J9YXQ4 647 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 GNAI3P08754 354 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 SRGNP10124 158 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 POLD1P28340 1107 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 RFX5P48382 616 aaPredicted RBP8.06□□□□□ -1.12
VPS53-209ENST00000570771 EMP3P54852 163 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 CTSWP56202 376 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 C2CD5Q86YS7 1000 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 RASEFQ8IZ41 740 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 TTLL11Q8NHH1 800 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 ZNF594Q96JF6 807 aaPredicted RBP8.06□□□□□ -1.12
VPS53-209ENST00000570771 PLA2G12BQ9BX93 195 aa8.06□□□□□ -1.12
VPS53-209ENST00000570771 BRCA1P38398 1863 aaKnown RBP8.06□□□□□ -1.12
VPS53-209ENST00000570771 POTEB3A0JP26 581 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 SNAP23O00161 211 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 CSF1RP07333 972 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 RABL6Q3YEC7 729 aaPredicted RBP8.05□□□□□ -1.12
VPS53-209ENST00000570771 POTEBQ6S5H4 581 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 LMBR1LQ6UX01 489 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 PPP1R42Q7Z4L9 355 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 BRIP1Q9BX63 1249 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 PUS3Q9BZE2 481 aaKnown RBP8.05□□□□□ -1.12
VPS53-209ENST00000570771 ZBTB40Q9NUA8 1239 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 PA2G4Q9UQ80 394 aaKnown RBP8.05□□□□□ -1.12
VPS53-209ENST00000570771 PCDHB15Q9Y5E8 787 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 LRRC37AA6NMS7 1700 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 LTBP1Q14766 1721 aa8.05□□□□□ -1.12
VPS53-209ENST00000570771 SLX4Q8IY92 1834 aa8.04□□□□□ -1.12
VPS53-209ENST00000570771 ST5P78524 1137 aa8.04□□□□□ -1.12
VPS53-209ENST00000570771 SF3B3Q15393 1217 aaKnown RBP8.04□□□□□ -1.12
VPS53-209ENST00000570771 TPTE2Q6XPS3 522 aa8.04□□□□□ -1.12
VPS53-209ENST00000570771 C7orf43Q8WVR3 580 aa8.04□□□□□ -1.12
VPS53-209ENST00000570771 CCDC136Q96JN2 1154 aa8.04□□□□□ -1.12
VPS53-209ENST00000570771 GPR101Q96P66 508 aaPredicted RBP8.04□□□□□ -1.12
VPS53-209ENST00000570771 HS3ST6Q96QI5 342 aa8.04□□□□□ -1.12
VPS53-209ENST00000570771 NYXQ9GZU5 481 aa8.04□□□□□ -1.12
VPS53-209ENST00000570771 PCDHB13Q9Y5F0 798 aa8.04□□□□□ -1.12
VPS53-209ENST00000570771 CD2APQ9Y5K6 639 aa8.04□□□□□ -1.12
VPS53-209ENST00000570771 RTL9Q8NET4 1388 aa8.03□□□□□ -1.12
VPS53-209ENST00000570771 PDE8AO60658 829 aa8.03□□□□□ -1.12
VPS53-209ENST00000570771 UBTFL1P0CB47 393 aaPredicted RBP8.03□□□□□ -1.12
VPS53-209ENST00000570771 KLRK1P26718 216 aa8.03□□□□□ -1.12
VPS53-209ENST00000570771 HOXA10P31260 410 aaPredicted RBP8.03□□□□□ -1.12
VPS53-209ENST00000570771 LRRC24Q50LG9 513 aa8.03□□□□□ -1.12
VPS53-209ENST00000570771 PRPF40BQ6NWY9 871 aaKnown RBP8.03□□□□□ -1.12
VPS53-209ENST00000570771 CEP85Q6P2H3 762 aa8.03□□□□□ -1.12
VPS53-209ENST00000570771 C9orf78Q9NZ63 289 aaPredicted RBP8.03□□□□□ -1.12
VPS53-209ENST00000570771 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.03□□□□□ -1.12
VPS53-209ENST00000570771 SPEF2Q9C093 1822 aa8.02□□□□□ -1.13
VPS53-209ENST00000570771 NFKBIEO00221 500 aa8.02□□□□□ -1.13
VPS53-209ENST00000570771 HMMRO75330 724 aa8.02□□□□□ -1.13
VPS53-209ENST00000570771 GNAI2P04899 355 aa8.02□□□□□ -1.13
VPS53-209ENST00000570771 HSP90B1P14625 803 aaKnown RBP8.02□□□□□ -1.13
VPS53-209ENST00000570771 ITGA6P23229 1130 aa8.02□□□□□ -1.13
VPS53-209ENST00000570771 RASSF7Q02833 373 aa8.02□□□□□ -1.13
VPS53-209ENST00000570771 PTPN12Q05209 780 aaKnown RBP8.02□□□□□ -1.13
VPS53-209ENST00000570771 RWDD1Q9H446 243 aaPredicted RBP8.02□□□□□ -1.13
VPS53-209ENST00000570771 CACNA1SQ13698 1873 aa8.02□□□□□ -1.13
VPS53-209ENST00000570771 A0A1B0GUL6 1792 aa8.02□□□□□ -1.13
VPS53-209ENST00000570771 IRS2Q9Y4H2 1338 aa8.02□□□□□ -1.13
VPS53-209ENST00000570771 NPR1P16066 1061 aa8.01□□□□□ -1.13
VPS53-209ENST00000570771 GTF2E1P29083 439 aaPredicted RBP8.01□□□□□ -1.13
VPS53-209ENST00000570771 MTX1Q13505 466 aa8.01□□□□□ -1.13
VPS53-209ENST00000570771 GRAPQ13588 217 aa8.01□□□□□ -1.13
VPS53-209ENST00000570771 ATG9AQ7Z3C6 839 aa8.01□□□□□ -1.13
VPS53-209ENST00000570771 SKAP1Q86WV1 359 aa8.01□□□□□ -1.13
VPS53-209ENST00000570771 RPAP2Q8IXW5 612 aaPredicted RBP8.01□□□□□ -1.13
VPS53-209ENST00000570771 GRAPLQ8TC17 118 aaPredicted RBP8.01□□□□□ -1.13
VPS53-209ENST00000570771 ZNF622Q969S3 477 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS53-209ENST00000570771 PPEF1O14829 653 aaPredicted RBP8□□□□□ -1.13
VPS53-209ENST00000570771 NPHP1O15259 732 aa8□□□□□ -1.13
VPS53-209ENST00000570771 C21orf2O43822 256 aa8□□□□□ -1.13
VPS53-209ENST00000570771 PDE6BP35913 854 aa8□□□□□ -1.13
VPS53-209ENST00000570771 TGFB2P61812 414 aa8□□□□□ -1.13
VPS53-209ENST00000570771 GPSM2P81274 684 aa8□□□□□ -1.13
VPS53-209ENST00000570771 STYK1Q6J9G0 422 aa8□□□□□ -1.13
VPS53-209ENST00000570771 VGLL2Q8N8G2 317 aa8□□□□□ -1.13
VPS53-209ENST00000570771 HELBQ8NG08 1087 aaPredicted RBP8□□□□□ -1.13
VPS53-209ENST00000570771 MASTLQ96GX5 879 aa8□□□□□ -1.13
VPS53-209ENST00000570771 NLRP3Q96P20 1036 aa8□□□□□ -1.13
VPS53-209ENST00000570771 TMEM106CQ9BVX2 250 aa8□□□□□ -1.13
VPS53-209ENST00000570771 SIL1Q9H173 461 aa8□□□□□ -1.13
VPS53-209ENST00000570771 BCS1LQ9Y276 419 aa8□□□□□ -1.13
VPS53-209ENST00000570771 CHMP3Q9Y3E7 222 aa8□□□□□ -1.13
VPS53-209ENST00000570771 H0YIN7 160 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 SRGAP3O43295 1099 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 IGHDP01880 384 aa7.99□□□□□ -1.13
VPS53-209ENST00000570771 HDAC1Q13547 482 aaPredicted RBP7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms