RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 COL4A1P02462 1669 aa13.02□□□□□ -0.32
CDH3-210ENST00000569117 LRRC37AA6NMS7 1700 aa13.02□□□□□ -0.32
CDH3-210ENST00000569117 BRCA1P38398 1863 aaKnown RBP13.02□□□□□ -0.32
CDH3-210ENST00000569117 CACNA1SQ13698 1873 aa13.02□□□□□ -0.32
CDH3-210ENST00000569117 ZMYND10O75800 440 aa13.02□□□□□ -0.33
CDH3-210ENST00000569117 PTGER2P43116 358 aa13.02□□□□□ -0.33
CDH3-210ENST00000569117 SF3B3Q15393 1217 aaKnown RBP13.02□□□□□ -0.33
CDH3-210ENST00000569117 CRY2Q49AN0 593 aa13.02□□□□□ -0.33
CDH3-210ENST00000569117 LMBR1LQ6UX01 489 aa13.02□□□□□ -0.33
CDH3-210ENST00000569117 SIRT2Q8IXJ6 389 aa13.02□□□□□ -0.33
CDH3-210ENST00000569117 TTLL11Q8NHH1 800 aa13.02□□□□□ -0.33
CDH3-210ENST00000569117 BRIP1Q9BX63 1249 aa13.02□□□□□ -0.33
CDH3-210ENST00000569117 TAF1P21675 1872 aa13.02□□□□□ -0.33
CDH3-210ENST00000569117 PNMA6EA0A0J9YXQ4 647 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 KLRG2A4D1S0 409 aaPredicted RBP13.01□□□□□ -0.33
CDH3-210ENST00000569117 SRGAP3O43295 1099 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 ATP8B2P98198 1209 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 FAM161AQ3B820 660 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 CCDC152Q4G0S7 254 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 SMYD5Q6GMV2 418 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 C3orf67Q6ZVT6 689 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 CCDC24Q8N4L8 307 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 SSH3Q8TE77 659 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 NLRP3Q96P20 1036 aa13.01□□□□□ -0.33
CDH3-210ENST00000569117 HMMRO75330 724 aa13□□□□□ -0.33
CDH3-210ENST00000569117 HDAC1Q13547 482 aaPredicted RBP13□□□□□ -0.33
CDH3-210ENST00000569117 GREM2Q9H772 168 aa13□□□□□ -0.33
CDH3-210ENST00000569117 SPON1Q9HCB6 807 aa13□□□□□ -0.33
CDH3-210ENST00000569117 PDE6BP35913 854 aa12.99□□□□□ -0.33
CDH3-210ENST00000569117 PPP4R2Q9NY27 417 aa12.99□□□□□ -0.33
CDH3-210ENST00000569117 PDZRN3Q9UPQ7 1066 aa12.99□□□□□ -0.33
CDH3-210ENST00000569117 CHMP3Q9Y3E7 222 aa12.99□□□□□ -0.33
CDH3-210ENST00000569117 ITGA6P23229 1130 aa12.98□□□□□ -0.33
CDH3-210ENST00000569117 RFX5P48382 616 aaPredicted RBP12.98□□□□□ -0.33
CDH3-210ENST00000569117 IFIT5Q13325 482 aaKnown RBP12.98□□□□□ -0.33
CDH3-210ENST00000569117 CCDC57Q2TAC2 916 aa12.98□□□□□ -0.33
CDH3-210ENST00000569117 LTBP1Q14766 1721 aa12.97□□□□□ -0.33
CDH3-210ENST00000569117 ANKRD18BA2A2Z9 1011 aa12.97□□□□□ -0.33
CDH3-210ENST00000569117 SRGNP10124 158 aa12.97□□□□□ -0.33
CDH3-210ENST00000569117 HOXA10P31260 410 aaPredicted RBP12.97□□□□□ -0.33
CDH3-210ENST00000569117 IFNL1Q8IU54 200 aa12.97□□□□□ -0.33
CDH3-210ENST00000569117 RPGRQ92834 1020 aaKnown RBP12.97□□□□□ -0.33
CDH3-210ENST00000569117 CCDC85AQ96PX6 553 aaPredicted RBP12.97□□□□□ -0.33
CDH3-210ENST00000569117 CDC5LQ99459 802 aaKnown RBP12.97□□□□□ -0.33
CDH3-210ENST00000569117 LARP6Q9BRS8 491 aaKnown RBP12.97□□□□□ -0.33
CDH3-210ENST00000569117 COPRSQ9NQ92 184 aa12.97□□□□□ -0.33
CDH3-210ENST00000569117 ARAP2Q8WZ64 1704 aa12.96□□□□□ -0.33
CDH3-210ENST00000569117 KDM2BQ8NHM5 1336 aa12.96□□□□□ -0.33
CDH3-210ENST00000569117 NPR1P16066 1061 aa12.96□□□□□ -0.33
CDH3-210ENST00000569117 PTPN12Q05209 780 aaKnown RBP12.96□□□□□ -0.33
CDH3-210ENST00000569117 DDX46Q7L014 1031 aaKnown RBP12.96□□□□□ -0.33
CDH3-210ENST00000569117 CCDC136Q96JN2 1154 aa12.96□□□□□ -0.33
CDH3-210ENST00000569117 RWDD1Q9H446 243 aaPredicted RBP12.96□□□□□ -0.33
CDH3-210ENST00000569117 NOP58Q9Y2X3 529 aaKnown RBP12.96□□□□□ -0.33
CDH3-210ENST00000569117 CIAO1O76071 339 aa12.95□□□□□ -0.34
CDH3-210ENST00000569117 PDE4AP27815 886 aa12.95□□□□□ -0.34
CDH3-210ENST00000569117 GRAPQ13588 217 aa12.95□□□□□ -0.34
CDH3-210ENST00000569117 STYK1Q6J9G0 422 aa12.95□□□□□ -0.34
CDH3-210ENST00000569117 C2CD5Q86YS7 1000 aa12.95□□□□□ -0.34
CDH3-210ENST00000569117 GRAPLQ8TC17 118 aaPredicted RBP12.95□□□□□ -0.34
CDH3-210ENST00000569117 RBM17Q96I25 401 aaKnown RBP12.95□□□□□ -0.34
CDH3-210ENST00000569117 CRAMP1Q96RY5 1269 aa12.95□□□□□ -0.34
CDH3-210ENST00000569117 SEC31BQ9NQW1 1179 aa12.95□□□□□ -0.34
CDH3-210ENST00000569117 CD2APQ9Y5K6 639 aa12.95□□□□□ -0.34
CDH3-210ENST00000569117 H0YIN7 160 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 IGHDP01880 384 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 TGFB2P61812 414 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 TAF7LQ5H9L4 462 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 SMC5Q8IY18 1101 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 KLHDC4Q8TBB5 520 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 CELF1Q92879 486 aaKnown RBP12.94□□□□□ -0.34
CDH3-210ENST00000569117 GCC1Q96CN9 775 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 MASTLQ96GX5 879 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 DCTPP1Q9H773 170 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 PA2G4Q9UQ80 394 aaKnown RBP12.94□□□□□ -0.34
CDH3-210ENST00000569117 SLX4Q8IY92 1834 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 ARFGEF1Q9Y6D6 1849 aa12.94□□□□□ -0.34
CDH3-210ENST00000569117 EYA2O00167 538 aa12.93□□□□□ -0.34
CDH3-210ENST00000569117 IGHMBP2P38935 993 aaKnown RBP12.93□□□□□ -0.34
CDH3-210ENST00000569117 HSP90AB4PQ58FF6 505 aa12.93□□□□□ -0.34
CDH3-210ENST00000569117 B4GALNT3Q6L9W6 998 aa12.93□□□□□ -0.34
CDH3-210ENST00000569117 CENPQQ7L2Z9 268 aaPredicted RBP12.93□□□□□ -0.34
CDH3-210ENST00000569117 ANKRD18AQ8IVF6 992 aa12.93□□□□□ -0.34
CDH3-210ENST00000569117 ZNF594Q96JF6 807 aaPredicted RBP12.93□□□□□ -0.34
CDH3-210ENST00000569117 EXOC6BQ9Y2D4 811 aa12.93□□□□□ -0.34
CDH3-210ENST00000569117 SURF6O75683 361 aaKnown RBP12.92□□□□□ -0.34
CDH3-210ENST00000569117 CHRNA5P30532 468 aa12.92□□□□□ -0.34
CDH3-210ENST00000569117 RPS8P62241 208 aaKnown RBP12.92□□□□□ -0.34
CDH3-210ENST00000569117 ATG9AQ7Z3C6 839 aa12.92□□□□□ -0.34
CDH3-210ENST00000569117 TMC4Q7Z404 712 aa12.92□□□□□ -0.34
CDH3-210ENST00000569117 ERC1Q8IUD2 1116 aa12.92□□□□□ -0.34
CDH3-210ENST00000569117 SIL1Q9H173 461 aa12.92□□□□□ -0.34
CDH3-210ENST00000569117 DUOX1Q9NRD9 1551 aa12.92□□□□□ -0.34
CDH3-210ENST00000569117 ZNF609O15014 1411 aa12.91□□□□□ -0.34
CDH3-210ENST00000569117 RAB11FIP3O75154 756 aa12.91□□□□□ -0.34
CDH3-210ENST00000569117 ALDH1B1P30837 517 aa12.91□□□□□ -0.34
CDH3-210ENST00000569117 IL15P40933 162 aaPredicted RBP12.91□□□□□ -0.34
CDH3-210ENST00000569117 MFSD10Q14728 455 aa12.91□□□□□ -0.34
CDH3-210ENST00000569117 LRRC24Q50LG9 513 aa12.91□□□□□ -0.34
CDH3-210ENST00000569117 LDHAL6AQ6ZMR3 332 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms