RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 PROSER3Q2NL68 480 aa15.7■□□□□ 0.1
VPS9D1-207ENST00000568691 ANGEL2Q5VTE6 544 aaKnown RBP15.7■□□□□ 0.1
VPS9D1-207ENST00000568691 RTF1Q92541 710 aaKnown RBP15.7■□□□□ 0.1
VPS9D1-207ENST00000568691 CFHR5Q9BXR6 569 aa15.7■□□□□ 0.1
VPS9D1-207ENST00000568691 KIAA0100Q14667 2235 aaKnown RBP15.7■□□□□ 0.1
VPS9D1-207ENST00000568691 RANBP2P49792 3224 aaKnown RBP15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 HTATSF1O43719 755 aaKnown RBP15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 ZNF280AP59817 542 aaPredicted RBP15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 FKBP1BP68106 108 aa15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 GPSM2P81274 684 aa15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 CAP1Q01518 475 aa15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 SCARF1Q14162 830 aa15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 RALBP1Q15311 655 aa15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 PRAMEF18Q5VWM3 479 aa15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 NLRP10Q86W26 655 aa15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 CELF1Q92879 486 aaKnown RBP15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 A0A0C4DFX4 3053 aa15.69■□□□□ 0.1
VPS9D1-207ENST00000568691 FKTNO75072 461 aa15.68■□□□□ 0.1
VPS9D1-207ENST00000568691 EN2P19622 333 aaPredicted RBP15.68■□□□□ 0.1
VPS9D1-207ENST00000568691 DDX46Q7L014 1031 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-207ENST00000568691 ANXA1P04083 346 aa15.67■□□□□ 0.1
VPS9D1-207ENST00000568691 MKRN3Q13064 507 aaKnown RBP15.67■□□□□ 0.1
VPS9D1-207ENST00000568691 CNGB1Q14028 1251 aaPredicted RBP15.67■□□□□ 0.1
VPS9D1-207ENST00000568691 ZNF428Q96B54 188 aa15.67■□□□□ 0.1
VPS9D1-207ENST00000568691 GMLQ99445 158 aa15.67■□□□□ 0.1
VPS9D1-207ENST00000568691 ZNF609O15014 1411 aa15.67■□□□□ 0.1
VPS9D1-207ENST00000568691 CEP290O15078 2479 aa15.66■□□□□ 0.1
VPS9D1-207ENST00000568691 OTOP1Q7RTM1 612 aa15.66■□□□□ 0.1
VPS9D1-207ENST00000568691 NSFL1CQ9UNZ2 370 aaKnown RBP15.66■□□□□ 0.1
VPS9D1-207ENST00000568691 TBC1D16Q8TBP0 767 aa15.65■□□□□ 0.1
VPS9D1-207ENST00000568691 OTUD5Q96G74 571 aa15.65■□□□□ 0.1
VPS9D1-207ENST00000568691 MYBBP1AQ9BQG0 1328 aaKnown RBP15.65■□□□□ 0.1
VPS9D1-207ENST00000568691 RBBP6Q7Z6E9 1792 aaKnown RBP15.64■□□□□ 0.1
VPS9D1-207ENST00000568691 C6orf229H3BNL8 230 aa15.64■□□□□ 0.09
VPS9D1-207ENST00000568691 TMC4Q7Z404 712 aa15.64■□□□□ 0.09
VPS9D1-207ENST00000568691 ERBB4Q15303 1308 aa15.64■□□□□ 0.09
VPS9D1-207ENST00000568691 COL6A3P12111 3177 aa15.63■□□□□ 0.09
VPS9D1-207ENST00000568691 U2AF1L5P0DN76 240 aaPredicted RBP15.63■□□□□ 0.09
VPS9D1-207ENST00000568691 U2AF1Q01081 240 aaKnown RBP eCLIP15.63■□□□□ 0.09
VPS9D1-207ENST00000568691 TRIM17Q9Y577 477 aa15.63■□□□□ 0.09
VPS9D1-207ENST00000568691 PITPNM2Q9BZ72 1349 aa15.63■□□□□ 0.09
VPS9D1-207ENST00000568691 DDX60Q8IY21 1712 aaKnown RBP15.63■□□□□ 0.09
VPS9D1-207ENST00000568691 DLL1O00548 723 aa15.62■□□□□ 0.09
VPS9D1-207ENST00000568691 CENPBP07199 599 aaPredicted RBP15.62■□□□□ 0.09
VPS9D1-207ENST00000568691 PTPN12Q05209 780 aaKnown RBP15.62■□□□□ 0.09
VPS9D1-207ENST00000568691 INTS3Q68E01 1043 aaKnown RBP15.62■□□□□ 0.09
VPS9D1-207ENST00000568691 RSBN1LQ6PCB5 846 aaPredicted RBP15.62■□□□□ 0.09
VPS9D1-207ENST00000568691 ARMC5Q96C12 935 aa15.62■□□□□ 0.09
VPS9D1-207ENST00000568691 TRMT112Q9UI30 125 aaKnown RBP15.62■□□□□ 0.09
VPS9D1-207ENST00000568691 CUL9Q8IWT3 2517 aa15.62■□□□□ 0.09
VPS9D1-207ENST00000568691 SH3TC1Q8TE82 1336 aa15.62■□□□□ 0.09
VPS9D1-207ENST00000568691 TCIRG1Q13488 830 aa15.61■□□□□ 0.09
VPS9D1-207ENST00000568691 SF3B3Q15393 1217 aaKnown RBP15.61■□□□□ 0.09
VPS9D1-207ENST00000568691 NBPF9Q3BBW0 867 aa15.61■□□□□ 0.09
VPS9D1-207ENST00000568691 MYOZ2Q9NPC6 264 aa15.61■□□□□ 0.09
VPS9D1-207ENST00000568691 COPS6Q7L5N1 327 aa15.6■□□□□ 0.09
VPS9D1-207ENST00000568691 AGBL3Q8NEM8 1001 aa15.6■□□□□ 0.09
VPS9D1-207ENST00000568691 PNISRQ8TF01 805 aaKnown RBP15.6■□□□□ 0.09
VPS9D1-207ENST00000568691 PTPN22Q9Y2R2 807 aa15.6■□□□□ 0.09
VPS9D1-207ENST00000568691 H0YGN5 161 aa15.59■□□□□ 0.09
VPS9D1-207ENST00000568691 IGF2BP3O00425 579 aaKnown RBP eCLIP15.59■□□□□ 0.09
VPS9D1-207ENST00000568691 LDLRAD1Q5T700 205 aa15.59■□□□□ 0.09
VPS9D1-207ENST00000568691 SPRYD7Q5W111 196 aa15.59■□□□□ 0.09
VPS9D1-207ENST00000568691 XAGE3Q8WTP9 111 aa15.59■□□□□ 0.09
VPS9D1-207ENST00000568691 PODXL2Q9NZ53 605 aa15.59■□□□□ 0.09
VPS9D1-207ENST00000568691 FZD1Q9UP38 647 aa15.59■□□□□ 0.09
VPS9D1-207ENST00000568691 WTIPA6NIX2 430 aaPredicted RBP15.58■□□□□ 0.08
VPS9D1-207ENST00000568691 SREBF2Q12772 1141 aa15.58■□□□□ 0.08
VPS9D1-207ENST00000568691 EYA3Q99504 573 aa15.58■□□□□ 0.08
VPS9D1-207ENST00000568691 DLG5Q8TDM6 1919 aa15.57■□□□□ 0.08
VPS9D1-207ENST00000568691 USP17L8P0C7I0 530 aa15.57■□□□□ 0.08
VPS9D1-207ENST00000568691 EIF2S2P20042 333 aaKnown RBP15.57■□□□□ 0.08
VPS9D1-207ENST00000568691 IFNL1Q8IU54 200 aa15.57■□□□□ 0.08
VPS9D1-207ENST00000568691 CD99L2Q8TCZ2 262 aa15.57■□□□□ 0.08
VPS9D1-207ENST00000568691 FAM89AQ96GI7 184 aa15.57■□□□□ 0.08
VPS9D1-207ENST00000568691 MXD3Q9BW11 206 aa15.57■□□□□ 0.08
VPS9D1-207ENST00000568691 PSME4Q14997 1843 aa15.57■□□□□ 0.08
VPS9D1-207ENST00000568691 AIMP1Q12904 312 aaKnown RBP15.56■□□□□ 0.08
VPS9D1-207ENST00000568691 ZNF333Q96JL9 665 aa15.56■□□□□ 0.08
VPS9D1-207ENST00000568691 PLEKHF1Q96S99 279 aa15.56■□□□□ 0.08
VPS9D1-207ENST00000568691 ZC3H12CQ9C0D7 883 aaKnown RBP15.56■□□□□ 0.08
VPS9D1-207ENST00000568691 NUDCQ9Y266 331 aa15.56■□□□□ 0.08
VPS9D1-207ENST00000568691 ZNF646O15015 1829 aaPredicted RBP15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 WNT10BO00744 389 aa15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 UFL1O94874 794 aa15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 RPS8P62241 208 aaKnown RBP15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 PRKG1Q13976 671 aa15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 TTLL12Q14166 644 aaPredicted RBP15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 HSP90AB3PQ58FF7 597 aa15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 CFAP53Q96M91 514 aa15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 ISCA1Q9BUE6 129 aa15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 MRS2Q9HD23 443 aa15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 SEC31BQ9NQW1 1179 aa15.55■□□□□ 0.08
VPS9D1-207ENST00000568691 PPP2R1AP30153 589 aa15.54■□□□□ 0.08
VPS9D1-207ENST00000568691 NECTIN2Q92692 538 aa15.54■□□□□ 0.08
VPS9D1-207ENST00000568691 RBM27Q9P2N5 1060 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-207ENST00000568691 LAMA3Q16787 3333 aa15.54■□□□□ 0.08
VPS9D1-207ENST00000568691 SSC5DA1L4H1 1573 aa15.53■□□□□ 0.08
VPS9D1-207ENST00000568691 GJA5P36382 358 aa15.53■□□□□ 0.08
VPS9D1-207ENST00000568691 CHRDL2Q6WN34 429 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms