RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TRPM4Q8TD43 1214 aa4.77□□□□□ -1.65
VPS35-208ENST00000568612 SPACA7Q96KW9 195 aa4.77□□□□□ -1.65
VPS35-208ENST00000568612 ELP3Q9H9T3 547 aa4.77□□□□□ -1.65
VPS35-208ENST00000568612 ABI2Q9NYB9 513 aaPredicted RBP4.77□□□□□ -1.65
VPS35-208ENST00000568612 MZF1P28698 734 aaPredicted RBP4.76□□□□□ -1.65
VPS35-208ENST00000568612 ZEB1P37275 1124 aaPredicted RBP4.76□□□□□ -1.65
VPS35-208ENST00000568612 HYAL2Q12891 473 aa4.76□□□□□ -1.65
VPS35-208ENST00000568612 TRIM28Q13263 835 aaKnown RBP4.76□□□□□ -1.65
VPS35-208ENST00000568612 GDF6Q6KF10 455 aaPredicted RBP4.76□□□□□ -1.65
VPS35-208ENST00000568612 C20orf204Q6ZNR8 217 aa4.76□□□□□ -1.65
VPS35-208ENST00000568612 NCAPG2Q86XI2 1143 aa4.76□□□□□ -1.65
VPS35-208ENST00000568612 LPIN3Q9BQK8 851 aa4.76□□□□□ -1.65
VPS35-208ENST00000568612 GGNBP2Q9H3C7 697 aa4.76□□□□□ -1.65
VPS35-208ENST00000568612 TMEM63CQ9P1W3 806 aa4.76□□□□□ -1.65
VPS35-208ENST00000568612 KANSL3Q9P2N6 904 aa4.76□□□□□ -1.65
VPS35-208ENST00000568612 ICMTO60725 284 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 APBA3O96018 575 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 CYP2E1P05181 493 aaPredicted RBP4.75□□□□□ -1.65
VPS35-208ENST00000568612 NID1P14543 1247 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 SOX18P35713 384 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 AFF1P51825 1210 aaKnown RBP4.75□□□□□ -1.65
VPS35-208ENST00000568612 PLA2G4EQ3MJ16 856 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 ERICH6BQ5W0A0 696 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 PDE12Q6L8Q7 609 aaKnown RBP4.75□□□□□ -1.65
VPS35-208ENST00000568612 ALYREFQ86V81 257 aaKnown RBP4.75□□□□□ -1.65
VPS35-208ENST00000568612 DMRTC2Q8IXT2 367 aaPredicted RBP4.75□□□□□ -1.65
VPS35-208ENST00000568612 OR13H1Q8NG92 308 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 PLD4Q96BZ4 506 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 PRDM6Q9NQX0 595 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 CCDC87Q9NVE4 849 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 FRRS1LQ9P0K9 344 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 EGFL7Q9UHF1 273 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 BRPF3Q9ULD4 1205 aa4.75□□□□□ -1.65
VPS35-208ENST00000568612 KRBA1A5PL33 1030 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 FZD6O60353 706 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 NEFLP07196 543 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 SPATA31C1P0DKV0 1188 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 CES1P23141 567 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 USP5P45974 858 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 RAC1P63000 192 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 COL13A1Q5TAT6 717 aaPredicted RBP4.74□□□□□ -1.65
VPS35-208ENST00000568612 CEP135Q66GS9 1140 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 WFDC8Q8IUA0 241 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 TMC1Q8TDI8 760 aa4.74□□□□□ -1.65
VPS35-208ENST00000568612 BIN2Q9UBW5 565 aaPredicted RBP4.74□□□□□ -1.65
VPS35-208ENST00000568612 PHACTR2O75167 634 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 BRD1O95696 1058 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 PDIA4P13667 645 aaKnown RBP4.73□□□□□ -1.65
VPS35-208ENST00000568612 NPR3P17342 541 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 ATP11AP98196 1134 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 EHHADHQ08426 723 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 COL9A3Q14050 684 aaPredicted RBP4.73□□□□□ -1.65
VPS35-208ENST00000568612 GRIK4Q16099 956 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 MSL1Q68DK7 614 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 TXNDC2Q86VQ3 553 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 HOMEZQ8IX15 550 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 C1orf127Q8N9H9 656 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 CNTN3Q9P232 1028 aa4.73□□□□□ -1.65
VPS35-208ENST00000568612 A0A0A0MRY4 1105 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 FAM177BA6PVY3 158 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 C1QTNF9BB2RNN3 333 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 MSTNO14793 375 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 NDUFB5O43674 189 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 SMNDC1O75940 238 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS35-208ENST00000568612 CDC25BP30305 580 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 IL22RA1Q8N6P7 574 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 LACRTQ9GZZ8 138 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 RASSF4Q9H2L5 321 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 FOXD3Q9UJU5 478 aaPredicted RBP4.72□□□□□ -1.65
VPS35-208ENST00000568612 TRIM33Q9UPN9 1127 aa4.72□□□□□ -1.65
VPS35-208ENST00000568612 TNFRSF21O75509 655 aa4.71□□□□□ -1.66
VPS35-208ENST00000568612 HOXD8P13378 290 aaPredicted RBP4.71□□□□□ -1.66
VPS35-208ENST00000568612 CHRNA4P43681 627 aa4.71□□□□□ -1.66
VPS35-208ENST00000568612 GRIK5Q16478 980 aa4.71□□□□□ -1.66
VPS35-208ENST00000568612 XKR5Q6UX68 686 aa4.71□□□□□ -1.66
VPS35-208ENST00000568612 CD163Q86VB7 1156 aa4.71□□□□□ -1.66
VPS35-208ENST00000568612 SNX29Q8TEQ0 813 aa4.71□□□□□ -1.66
VPS35-208ENST00000568612 TTC9Q92623 222 aa4.71□□□□□ -1.66
VPS35-208ENST00000568612 USP21Q9UK80 565 aa4.71□□□□□ -1.66
VPS35-208ENST00000568612 EREGO14944 169 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 TRPA1O75762 1119 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 IGHA1P01876 353 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 ACPPP15309 386 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 ARHGAP4P98171 946 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 TXNDC11Q6PKC3 985 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 FMR1NBQ8N0W7 255 aaPredicted RBP4.7□□□□□ -1.66
VPS35-208ENST00000568612 GJD3Q8N144 294 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 PMEPA1Q969W9 287 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 NACC1Q96RE7 527 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 SPOCK3Q9BQ16 436 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 PBX4Q9BYU1 374 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.7□□□□□ -1.66
VPS35-208ENST00000568612 IVNS1ABPQ9Y6Y0 642 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 MYO15BQ96JP2 1530 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 DCAF1Q9Y4B6 1507 aa4.7□□□□□ -1.66
VPS35-208ENST00000568612 SOWAHDA6NJG2 315 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 LINC01387J3KSC0 135 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 KIF4AO95239 1232 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 ITGB2P05107 769 aa4.69□□□□□ -1.66
VPS35-208ENST00000568612 POLR3DP05423 398 aaPredicted RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms