RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 SETQ01105 290 aaPredicted RBP12.18□□□□□ -0.46
USB1-212ENST00000566082 NAA30Q147X3 362 aaPredicted RBP12.18□□□□□ -0.46
USB1-212ENST00000566082 ERCC6LQ2NKX8 1250 aa12.17□□□□□ -0.46
USB1-212ENST00000566082 DHX32Q7L7V1 743 aaKnown RBP12.17□□□□□ -0.46
USB1-212ENST00000566082 IL17REQ8NFR9 667 aa12.17□□□□□ -0.46
USB1-212ENST00000566082 PHF8Q9UPP1 1060 aa12.17□□□□□ -0.46
USB1-212ENST00000566082 TTC21AQ8NDW8 1320 aa12.17□□□□□ -0.46
USB1-212ENST00000566082 ANKRD13DQ6ZTN6 518 aa12.17□□□□□ -0.46
USB1-212ENST00000566082 RNF216Q9NWF9 866 aaPredicted RBP12.17□□□□□ -0.46
USB1-212ENST00000566082 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.17□□□□□ -0.46
USB1-212ENST00000566082 AK9Q5TCS8 1911 aa12.17□□□□□ -0.46
USB1-212ENST00000566082 ABCA6Q8N139 1617 aa12.16□□□□□ -0.46
USB1-212ENST00000566082 H0YHG0 523 aa12.16□□□□□ -0.46
USB1-212ENST00000566082 TFCP2Q12800 502 aa12.16□□□□□ -0.46
USB1-212ENST00000566082 CCDC102BQ68D86 513 aa12.16□□□□□ -0.46
USB1-212ENST00000566082 LMBR1LQ6UX01 489 aa12.16□□□□□ -0.46
USB1-212ENST00000566082 GTF2E1P29083 439 aaPredicted RBP12.16□□□□□ -0.46
USB1-212ENST00000566082 LRRC8AQ8IWT6 810 aa12.16□□□□□ -0.46
USB1-212ENST00000566082 KCNH5Q8NCM2 988 aa12.16□□□□□ -0.46
USB1-212ENST00000566082 EAF2Q96CJ1 260 aaPredicted RBP12.16□□□□□ -0.46
USB1-212ENST00000566082 BRMS1Q9HCU9 246 aa12.16□□□□□ -0.46
USB1-212ENST00000566082 HOXC9P31274 260 aa12.16□□□□□ -0.46
USB1-212ENST00000566082 KARSQ15046 597 aaKnown RBP12.16□□□□□ -0.46
USB1-212ENST00000566082 UTP14CQ5TAP6 766 aaKnown RBP12.16□□□□□ -0.46
USB1-212ENST00000566082 THEMISQ8N1K5 641 aaPredicted RBP12.16□□□□□ -0.46
USB1-212ENST00000566082 VGLL3A8MV65 326 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 KCNQ3O43525 872 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 HSP90AB3PQ58FF7 597 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 CARD6Q9BX69 1037 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 ZBTB3Q9H5J0 574 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 TET3O43151 1660 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 MARCH6O60337 910 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 SUCLG2Q96I99 432 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 ZFYVE16Q7Z3T8 1539 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 SPHKAPQ2M3C7 1700 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 EVCP57679 992 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 PDE4CQ08493 712 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 CCDC47Q96A33 483 aaKnown RBP12.15□□□□□ -0.46
USB1-212ENST00000566082 USP28Q96RU2 1077 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 DBNDD2Q9BQY9 259 aa12.15□□□□□ -0.46
USB1-212ENST00000566082 LRRC7Q96NW7 1537 aa12.15□□□□□ -0.47
USB1-212ENST00000566082 ARID5BQ14865 1188 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 TMEM87AQ8NBN3 555 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 ALG1Q9BT22 464 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 XPO4Q9C0E2 1151 aaKnown RBP12.14□□□□□ -0.47
USB1-212ENST00000566082 IARSP41252 1262 aaKnown RBP12.14□□□□□ -0.47
USB1-212ENST00000566082 TDO2P48775 406 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 SEC62Q99442 399 aaKnown RBP12.14□□□□□ -0.47
USB1-212ENST00000566082 TRIM34Q9BYJ4 488 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 GOLGA8AA7E2F4 631 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 RXRAP19793 462 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 METAP2P50579 478 aaKnown RBP eCLIP12.14□□□□□ -0.47
USB1-212ENST00000566082 METTL24Q5JXM2 366 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 VPS37DQ86XT2 251 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 AIDAQ96BJ3 306 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 FTOQ9C0B1 505 aaKnown RBP eCLIP12.14□□□□□ -0.47
USB1-212ENST00000566082 MED14O60244 1454 aa12.14□□□□□ -0.47
USB1-212ENST00000566082 EVA1CP58658 441 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 NCBP1Q09161 790 aaKnown RBP12.13□□□□□ -0.47
USB1-212ENST00000566082 NCOA7Q8NI08 942 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 PI4K2BQ8TCG2 481 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 PAG1Q9NWQ8 432 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 PRC1O43663 620 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 TIMM10P62072 90 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 LZTFL1Q9NQ48 299 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 RAI14Q9P0K7 980 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 GOLGA6L9A6NEM1 432 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 PHACTR2O75167 634 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 AKAP4Q5JQC9 854 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 TXLNBQ8N3L3 684 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 TDRD7Q8NHU6 1098 aaKnown RBP12.13□□□□□ -0.47
USB1-212ENST00000566082 SLC26A6Q9BXS9 759 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 TSPYL1Q9H0U9 437 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 PUF60Q9UHX1 559 aaKnown RBP12.13□□□□□ -0.47
USB1-212ENST00000566082 PNPLA6Q8IY17 1366 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 ARAP3Q8WWN8 1544 aa12.13□□□□□ -0.47
USB1-212ENST00000566082 IFIT3O14879 490 aaKnown RBP12.12□□□□□ -0.47
USB1-212ENST00000566082 BEND3Q5T5X7 828 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 C11orf57Q6ZUT1 292 aaPredicted RBP12.12□□□□□ -0.47
USB1-212ENST00000566082 ZNHIT6Q9NWK9 470 aaKnown RBP12.12□□□□□ -0.47
USB1-212ENST00000566082 MAGEC2Q9UBF1 373 aaPredicted RBP12.12□□□□□ -0.47
USB1-212ENST00000566082 CFAP74Q9C0B2 1584 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 SBNO1A3KN83 1393 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 AATKQ6ZMQ8 1374 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 EIF4A1P60842 406 aaKnown RBP12.12□□□□□ -0.47
USB1-212ENST00000566082 UBAC1Q9BSL1 405 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 CRACR2AQ9BSW2 395 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 IQGAP1P46940 1657 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 FANCCQ00597 558 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 MAP4K1Q92918 833 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 SRRTQ9BXP5 876 aaKnown RBP12.12□□□□□ -0.47
USB1-212ENST00000566082 GBP3Q9H0R5 595 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 SPTLC3Q9NUV7 552 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 SLC12A7Q9Y666 1083 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 C10orf67Q8IYJ2 551 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 CCDC191Q8NCU4 936 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 ANKRD24Q8TF21 1146 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 NACAP1Q9BZK3 213 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 NAPBQ9H115 298 aa12.12□□□□□ -0.47
USB1-212ENST00000566082 IL25Q9H293 177 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms