RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-218ENST00000566029 ISM2Q6H9L7 571 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 JADE2Q9NQC1 790 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 MKL2Q9ULH7 1088 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 NPHP3Q7Z494 1330 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 HNRNPH1P31943 449 aaKnown RBP3.36□□□□□ -1.87
CHD9-218ENST00000566029 E2F4Q16254 413 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 CCDC150Q8NCX0 1101 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 CCDC113Q9H0I3 377 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 L1RE1Q9UN81 338 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 CLNS1AP54105 237 aaKnown RBP3.36□□□□□ -1.87
CHD9-218ENST00000566029 IGBP1P78318 339 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 SF3B2Q13435 895 aaKnown RBP3.36□□□□□ -1.87
CHD9-218ENST00000566029 LRRC8AQ8IWT6 810 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 KIFC2Q96AC6 838 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 PDE11AQ9HCR9 933 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 CFAP45Q9UL16 551 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 AOX1Q06278 1338 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 FIBPO43427 364 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 RASEFQ8IZ41 740 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 EDEM3Q9BZQ6 932 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 USP8P40818 1118 aa3.36□□□□□ -1.87
CHD9-218ENST00000566029 TMPOP42166 694 aaKnown RBP3.36□□□□□ -1.87
CHD9-218ENST00000566029 LEO1Q8WVC0 666 aaPredicted RBP3.36□□□□□ -1.87
CHD9-218ENST00000566029 CCDC85AQ96PX6 553 aaPredicted RBP3.36□□□□□ -1.87
CHD9-218ENST00000566029 MRC2Q9UBG0 1479 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 SHROOM2Q13796 1616 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 MNAT1P51948 309 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 EFCAB6Q5THR3 1501 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 ADGRL3Q9HAR2 1447 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 KIAA0232Q92628 1395 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 ZKSCAN8Q15776 578 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 DHX40Q8IX18 779 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 SPOCK2Q92563 424 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 UBXN4Q92575 508 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 SRGAP3O43295 1099 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 CSB-PGBD3P0DP91 1061 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 CA8P35219 290 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 ZFYVE27Q5T4F4 411 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 ITFG2Q969R8 447 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 MPHOSPH8Q99549 860 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 IL25Q9H293 177 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 TNMDQ9H2S6 317 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 URB2Q14146 1524 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 SHOX2O60902 331 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 U2AF1L5P0DN76 240 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 EIF5P55010 431 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 U2AF1Q01081 240 aaKnown RBP eCLIP3.35□□□□□ -1.87
CHD9-218ENST00000566029 ICA1Q05084 483 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 CWC27Q6UX04 472 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 CCDC73Q6ZRK6 1079 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 NUTM1Q86Y26 1132 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 UTP14AQ9BVJ6 771 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 CARD6Q9BX69 1037 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 NPHP4O75161 1426 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 ANKRD65E5RJM6 399 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 TRIM65Q6PJ69 517 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 IKBKGQ9Y6K9 419 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 KDM5AP29375 1690 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 ADGRB2O60241 1585 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 SMC2O95347 1197 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 TMED1Q13445 227 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 NBPF6Q5VWK0 638 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 NBPF5PQ86XG9 351 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 ANKRD20A12PQ8NF67 263 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 NBPF4Q96M43 638 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 DACT1Q9NYF0 836 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 SMC3Q9UQE7 1217 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 FAM169AQ9Y6X4 670 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 PLCH2O75038 1416 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 DUOX2Q9NRD8 1548 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 POTEB2H3BUK9 544 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 KRT85P78386 507 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 RESTQ13127 1097 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 NEDD9Q14511 834 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 BEND6Q5SZJ8 279 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 WLSQ5T9L3 541 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 DNAAF4Q8WXU2 420 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 TATDN2Q93075 761 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 LTV1Q96GA3 475 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 GSDMDP57764 484 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 IRX1P78414 480 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 PLEKHO1Q53GL0 409 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 ZC3H12AQ5D1E8 599 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 TTC19Q6DKK2 380 aaPredicted RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 TMEM139Q8IV31 216 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 LRRC43Q8N309 656 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 PRPF38AQ8NAV1 312 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 FAM71BQ8TC56 605 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 FAM107BQ9H098 131 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 VPS18Q9P253 973 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 TRAK1Q9UPV9 953 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 CASTP20810 708 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 ZNF165P49910 485 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 MTHFSP49914 203 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 SLC4A8Q2Y0W8 1093 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 FMNL3Q8IVF7 1028 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 CKAP2LQ8IYA6 745 aa3.35□□□□□ -1.87
CHD9-218ENST00000566029 CALR3Q96L12 384 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 LSG1Q9H089 658 aaKnown RBP3.35□□□□□ -1.87
CHD9-218ENST00000566029 EPC1Q9H2F5 836 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms