RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	CRKL	P46109	303 aa	Known RBP	13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	NEK4	P51957	841 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	UBE2H	P62256	183 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	TAF7L	Q5H9L4	462 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	ANKRD44	Q8N8A2	993 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	ZBTB3	Q9H5J0	574 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	CALCOCO1	Q9P1Z2	691 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	PAXBP1	Q9Y5B6	917 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	MCC	P23508	829 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	NEXN	Q0ZGT2	675 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	CWF19L2	Q2TBE0	894 aa	Known RBP	13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	KRT222	Q8N1A0	295 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	PLBD2	Q8NHP8	589 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	MYD88	Q99836	296 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	CCDC87	Q9NVE4	849 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	FAM53C	Q9NYF3	392 aa		13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	CCNL1	Q9UK58	526 aa	Predicted RBP	13.13	□□□□□ -0.31
TCF4-222	ENST00000564228	RREB1	Q92766	1687 aa		13.12	□□□□□ -0.31
TCF4-222	ENST00000564228	NUP98	P52948	1817 aa		13.12	□□□□□ -0.31
TCF4-222	ENST00000564228	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.12	□□□□□ -0.31
TCF4-222	ENST00000564228	KIF18A	Q8NI77	898 aa		13.12	□□□□□ -0.31
TCF4-222	ENST00000564228	OSBPL3	Q9H4L5	887 aa		13.12	□□□□□ -0.31
TCF4-222	ENST00000564228	TULP2	O00295	520 aa		13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	IGSF3	O75054	1194 aa		13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	KCNJ4	P48050	445 aa		13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	INTS5	Q6P9B9	1019 aa	Known RBP	13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	MPND	Q8N594	471 aa		13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	LINC00116	Q8NCU8	138 aa		13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	LINS1	Q8NG48	757 aa		13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	METTL22	Q9BUU2	404 aa	Predicted RBP	13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	EPB41L2	O43491	1005 aa	Known RBP	13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	KIF6	Q6ZMV9	814 aa		13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	USP44	Q9H0E7	712 aa		13.11	□□□□□ -0.31
TCF4-222	ENST00000564228	GNAI3	P08754	354 aa		13.1	□□□□□ -0.31
TCF4-222	ENST00000564228	UBTFL1	P0CB47	393 aa	Predicted RBP	13.1	□□□□□ -0.31
TCF4-222	ENST00000564228	IL6ST	P40189	918 aa	Predicted RBP	13.1	□□□□□ -0.31
TCF4-222	ENST00000564228	ZNF397	Q8NF99	534 aa	Predicted RBP	13.1	□□□□□ -0.31
TCF4-222	ENST00000564228	ANKRD36C	Q5JPF3	1778 aa		13.1	□□□□□ -0.31
TCF4-222	ENST00000564228	ATP5J2-PTCD1	G3V325	749 aa		13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	ALDH1L1	O75891	902 aa		13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	IGKV5-2	P06315	115 aa		13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	ILDR1	Q86SU0	546 aa	Predicted RBP	13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	SMARCA5	O60264	1052 aa	Predicted RBP	13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	GNAI2	P04899	355 aa		13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	SLFNL1	Q499Z3	407 aa		13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	DZIP3	Q86Y13	1208 aa	Known RBP	13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	TBC1D2B	Q9UPU7	963 aa		13.09	□□□□□ -0.31
TCF4-222	ENST00000564228	NEURL1B	A8MQ27	555 aa		13.08	□□□□□ -0.32
TCF4-222	ENST00000564228	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.08	□□□□□ -0.32
TCF4-222	ENST00000564228	ATP6V1D	Q9Y5K8	247 aa		13.08	□□□□□ -0.32
TCF4-222	ENST00000564228	LRRFIP2	Q9Y608	721 aa	Known RBP	13.08	□□□□□ -0.32
TCF4-222	ENST00000564228	C4B	P0C0L5	1744 aa		13.08	□□□□□ -0.32
TCF4-222	ENST00000564228	MAP3K15	Q6ZN16	1313 aa		13.08	□□□□□ -0.32
TCF4-222	ENST00000564228	TNS1	Q9HBL0	1735 aa	Known RBP	13.08	□□□□□ -0.32
TCF4-222	ENST00000564228	EIF5	P55010	431 aa	Known RBP	13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	CCDC112	Q8NEF3	446 aa		13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	VGLL3	A8MV65	326 aa		13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	GRM8	O00222	908 aa		13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	AP5Z1	O43299	807 aa		13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	CEP85	Q6P2H3	762 aa		13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	ESYT1	Q9BSJ8	1104 aa		13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	GDPD2	Q9HCC8	539 aa		13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	CNTNAP4	Q9C0A0	1308 aa		13.07	□□□□□ -0.32
TCF4-222	ENST00000564228	COL15A1	P39059	1388 aa		13.06	□□□□□ -0.32
TCF4-222	ENST00000564228	APBA3	O96018	575 aa		13.06	□□□□□ -0.32
TCF4-222	ENST00000564228	CCDC192	P0DO97	292 aa		13.06	□□□□□ -0.32
TCF4-222	ENST00000564228	ZSCAN22	P10073	491 aa	Predicted RBP	13.06	□□□□□ -0.32
TCF4-222	ENST00000564228	GCKR	Q14397	625 aa		13.06	□□□□□ -0.32
TCF4-222	ENST00000564228	HLF	Q16534	295 aa		13.06	□□□□□ -0.32
TCF4-222	ENST00000564228	LRRC4B	Q9NT99	713 aa		13.06	□□□□□ -0.32
TCF4-222	ENST00000564228	BCOR	Q6W2J9	1755 aa		13.06	□□□□□ -0.32
TCF4-222	ENST00000564228	GNPAT	O15228	680 aa		13.05	□□□□□ -0.32
TCF4-222	ENST00000564228	TNNT1	P13805	278 aa		13.05	□□□□□ -0.32
TCF4-222	ENST00000564228	RNF20	Q5VTR2	975 aa		13.05	□□□□□ -0.32
TCF4-222	ENST00000564228	SMIM5	Q71RC9	77 aa		13.05	□□□□□ -0.32
TCF4-222	ENST00000564228	FAM200A	Q8TCP9	573 aa		13.05	□□□□□ -0.32
TCF4-222	ENST00000564228	TCIRG1	Q13488	830 aa		13.05	□□□□□ -0.32
TCF4-222	ENST00000564228	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.05	□□□□□ -0.32
TCF4-222	ENST00000564228	CNPY2	Q9Y2B0	182 aa		13.05	□□□□□ -0.32
TCF4-222	ENST00000564228	UBR3	Q6ZT12	1888 aa		13.04	□□□□□ -0.32
TCF4-222	ENST00000564228		A0A087WZG4	1122 aa		13.04	□□□□□ -0.32
TCF4-222	ENST00000564228	PTGS1	P23219	599 aa		13.04	□□□□□ -0.32
TCF4-222	ENST00000564228	GPT	P24298	496 aa		13.04	□□□□□ -0.32
TCF4-222	ENST00000564228	UBE3B	Q7Z3V4	1068 aa		13.04	□□□□□ -0.32
TCF4-222	ENST00000564228	CWC25	Q9NXE8	425 aa	Predicted RBP	13.04	□□□□□ -0.32
TCF4-222	ENST00000564228	CCDC171	Q6TFL3	1326 aa		13.04	□□□□□ -0.32
TCF4-222	ENST00000564228	C4A	P0C0L4	1744 aa		13.04	□□□□□ -0.32
TCF4-222	ENST00000564228	PDE1A	P54750	535 aa		13.03	□□□□□ -0.32
TCF4-222	ENST00000564228	SLC27A3	Q5K4L6	730 aa		13.03	□□□□□ -0.32
TCF4-222	ENST00000564228	RC3H1	Q5TC82	1133 aa	Known RBP	13.03	□□□□□ -0.32
TCF4-222	ENST00000564228	SPC24	Q8NBT2	197 aa		13.03	□□□□□ -0.32
TCF4-222	ENST00000564228	AK7	Q96M32	723 aa		13.03	□□□□□ -0.32
TCF4-222	ENST00000564228	ERVV-1	B6SEH8	477 aa		13.03	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms