RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 LILRB5O75023 590 aa7.98□□□□□ -1.13
VPS35-205ENST00000563984 ILDR2Q71H61 639 aa7.98□□□□□ -1.13
VPS35-205ENST00000563984 RGL4Q8IZJ4 473 aa7.98□□□□□ -1.13
VPS35-205ENST00000563984 ARID3AQ99856 593 aa7.98□□□□□ -1.13
VPS35-205ENST00000563984 JPH1Q9HDC5 661 aaPredicted RBP7.98□□□□□ -1.13
VPS35-205ENST00000563984 SEPT3Q9UH03 358 aa7.98□□□□□ -1.13
VPS35-205ENST00000563984 RNF114Q9Y508 228 aa7.98□□□□□ -1.13
VPS35-205ENST00000563984 TARSP26639 723 aaKnown RBP7.97□□□□□ -1.13
VPS35-205ENST00000563984 PSAPL1Q6NUJ1 521 aa7.97□□□□□ -1.13
VPS35-205ENST00000563984 PIK3R5Q8WYR1 880 aa7.97□□□□□ -1.13
VPS35-205ENST00000563984 PODXL2Q9NZ53 605 aa7.97□□□□□ -1.13
VPS35-205ENST00000563984 NAGPAQ9UK23 515 aa7.97□□□□□ -1.13
VPS35-205ENST00000563984 USP21Q9UK80 565 aa7.97□□□□□ -1.13
VPS35-205ENST00000563984 KCNMB2Q9Y691 235 aa7.97□□□□□ -1.13
VPS35-205ENST00000563984 XYLBO75191 536 aa7.96□□□□□ -1.14
VPS35-205ENST00000563984 SASH3O75995 380 aa7.96□□□□□ -1.14
VPS35-205ENST00000563984 ARID4AP29374 1257 aaPredicted RBP7.96□□□□□ -1.14
VPS35-205ENST00000563984 SSTR4P31391 388 aa7.96□□□□□ -1.14
VPS35-205ENST00000563984 RAC1P63000 192 aa7.96□□□□□ -1.14
VPS35-205ENST00000563984 MLLT1Q03111 559 aaPredicted RBP7.96□□□□□ -1.14
VPS35-205ENST00000563984 FAM26DQ5JW98 314 aa7.96□□□□□ -1.14
VPS35-205ENST00000563984 HELQQ8TDG4 1101 aa7.96□□□□□ -1.14
VPS35-205ENST00000563984 ZFATQ9P243 1243 aa7.96□□□□□ -1.14
VPS35-205ENST00000563984 MTMR7Q9Y216 660 aa7.96□□□□□ -1.14
VPS35-205ENST00000563984 RARAP10276 462 aa7.95□□□□□ -1.14
VPS35-205ENST00000563984 CPB1P15086 417 aa7.95□□□□□ -1.14
VPS35-205ENST00000563984 ZAP70P43403 619 aa7.95□□□□□ -1.14
VPS35-205ENST00000563984 DHX32Q7L7V1 743 aaKnown RBP7.95□□□□□ -1.14
VPS35-205ENST00000563984 TRPM4Q8TD43 1214 aa7.95□□□□□ -1.14
VPS35-205ENST00000563984 BCL11AQ9H165 835 aa7.95□□□□□ -1.14
VPS35-205ENST00000563984 FNDC3AQ9Y2H6 1198 aaKnown RBP7.95□□□□□ -1.14
VPS35-205ENST00000563984 CD97P48960 835 aa7.94□□□□□ -1.14
VPS35-205ENST00000563984 PDE4CQ08493 712 aa7.94□□□□□ -1.14
VPS35-205ENST00000563984 B4GALNT3Q6L9W6 998 aa7.94□□□□□ -1.14
VPS35-205ENST00000563984 FMR1NBQ8N0W7 255 aaPredicted RBP7.94□□□□□ -1.14
VPS35-205ENST00000563984 WFDC12Q8WWY7 111 aa7.94□□□□□ -1.14
VPS35-205ENST00000563984 OAS3Q9Y6K5 1087 aaKnown RBP7.94□□□□□ -1.14
VPS35-205ENST00000563984 ZBTB39O15060 712 aa7.93□□□□□ -1.14
VPS35-205ENST00000563984 NRLP54845 237 aa7.93□□□□□ -1.14
VPS35-205ENST00000563984 PLAURQ03405 335 aa7.93□□□□□ -1.14
VPS35-205ENST00000563984 PHLDB3Q6NSJ2 640 aa7.93□□□□□ -1.14
VPS35-205ENST00000563984 FAM35AQ86V20 835 aa7.93□□□□□ -1.14
VPS35-205ENST00000563984 DMRTC2Q8IXT2 367 aaPredicted RBP7.93□□□□□ -1.14
VPS35-205ENST00000563984 GTF3C2Q8WUA4 911 aaPredicted RBP7.93□□□□□ -1.14
VPS35-205ENST00000563984 TLR7Q9NYK1 1049 aaKnown RBP7.93□□□□□ -1.14
VPS35-205ENST00000563984 CARNS1A5YM72 827 aa7.92□□□□□ -1.14
VPS35-205ENST00000563984 ZBTB42B2RXF5 422 aa7.92□□□□□ -1.14
VPS35-205ENST00000563984 UBAP1LF5GYI3 381 aa7.92□□□□□ -1.14
VPS35-205ENST00000563984 RGS9O75916 674 aaPredicted RBP7.92□□□□□ -1.14
VPS35-205ENST00000563984 SCNN1AP37088 669 aa7.92□□□□□ -1.14
VPS35-205ENST00000563984 AFF1P51825 1210 aaKnown RBP7.92□□□□□ -1.14
VPS35-205ENST00000563984 GPLD1P80108 840 aa7.92□□□□□ -1.14
VPS35-205ENST00000563984 PRR23CQ6ZRP0 262 aa7.92□□□□□ -1.14
VPS35-205ENST00000563984 HFE2Q6ZVN8 426 aa7.92□□□□□ -1.14
VPS35-205ENST00000563984 NLRP13Q86W25 1043 aa7.92□□□□□ -1.14
VPS35-205ENST00000563984 RPLP1P05386 114 aaKnown RBP7.91□□□□□ -1.14
VPS35-205ENST00000563984 PSAPP07602 524 aa7.91□□□□□ -1.14
VPS35-205ENST00000563984 NOS3P29474 1203 aa7.91□□□□□ -1.14
VPS35-205ENST00000563984 SOX18P35713 384 aa7.91□□□□□ -1.14
VPS35-205ENST00000563984 IREB2P48200 963 aaKnown RBP7.91□□□□□ -1.14
VPS35-205ENST00000563984 TRIP4Q15650 581 aaPredicted RBP7.91□□□□□ -1.14
VPS35-205ENST00000563984 NOM1Q5C9Z4 860 aaKnown RBP7.91□□□□□ -1.14
VPS35-205ENST00000563984 GPR152Q8TDT2 470 aa7.91□□□□□ -1.14
VPS35-205ENST00000563984 MEGF10Q96KG7 1140 aa7.91□□□□□ -1.14
VPS35-205ENST00000563984 FRRS1LQ9P0K9 344 aa7.91□□□□□ -1.14
VPS35-205ENST00000563984 MMP20O60882 483 aa7.9□□□□□ -1.14
VPS35-205ENST00000563984 MED26O95402 600 aa7.9□□□□□ -1.14
VPS35-205ENST00000563984 HOXD8P13378 290 aaPredicted RBP7.9□□□□□ -1.14
VPS35-205ENST00000563984 ALKBH2Q6NS38 261 aa7.9□□□□□ -1.14
VPS35-205ENST00000563984 SLC51AQ86UW1 340 aa7.9□□□□□ -1.14
VPS35-205ENST00000563984 LPIN3Q9BQK8 851 aa7.9□□□□□ -1.14
VPS35-205ENST00000563984 NPR3P17342 541 aa7.89□□□□□ -1.15
VPS35-205ENST00000563984 SF3B2Q13435 895 aaKnown RBP7.89□□□□□ -1.15
VPS35-205ENST00000563984 PERM1Q5SV97 790 aa7.89□□□□□ -1.15
VPS35-205ENST00000563984 ELMSAN1Q6PJG2 1045 aa7.89□□□□□ -1.15
VPS35-205ENST00000563984 TTC9Q92623 222 aa7.89□□□□□ -1.15
VPS35-205ENST00000563984 LOC102724428A0A0B4J2F2 783 aa7.88□□□□□ -1.15
VPS35-205ENST00000563984 FAM13AO94988 1023 aa7.88□□□□□ -1.15
VPS35-205ENST00000563984 PCSK2P16519 638 aa7.88□□□□□ -1.15
VPS35-205ENST00000563984 FSTP19883 344 aa7.88□□□□□ -1.15
VPS35-205ENST00000563984 GP2P55259 537 aaKnown RBP7.88□□□□□ -1.15
VPS35-205ENST00000563984 SIK1P57059 783 aa7.88□□□□□ -1.15
VPS35-205ENST00000563984 PDE12Q6L8Q7 609 aaKnown RBP7.88□□□□□ -1.15
VPS35-205ENST00000563984 RETREG2Q8NC44 543 aa7.88□□□□□ -1.15
VPS35-205ENST00000563984 NUDT16Q96DE0 195 aaKnown RBP7.88□□□□□ -1.15
VPS35-205ENST00000563984 MPSTP25325 297 aa7.87□□□□□ -1.15
VPS35-205ENST00000563984 EIF1AXP47813 144 aaKnown RBP7.87□□□□□ -1.15
VPS35-205ENST00000563984 JAG1P78504 1218 aa7.87□□□□□ -1.15
VPS35-205ENST00000563984 FKBP4Q02790 459 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS35-205ENST00000563984 ATCAYQ86WG3 371 aa7.87□□□□□ -1.15
VPS35-205ENST00000563984 OR13H1Q8NG92 308 aa7.87□□□□□ -1.15
VPS35-205ENST00000563984 J3QW42 95 aa7.86□□□□□ -1.15
VPS35-205ENST00000563984 EIF2AK2P19525 551 aaKnown RBP7.86□□□□□ -1.15
VPS35-205ENST00000563984 MZF1P28698 734 aaPredicted RBP7.86□□□□□ -1.15
VPS35-205ENST00000563984 GRIK5Q16478 980 aa7.86□□□□□ -1.15
VPS35-205ENST00000563984 TTC39BQ5VTQ0 682 aaPredicted RBP7.86□□□□□ -1.15
VPS35-205ENST00000563984 NPM2Q86SE8 214 aaKnown RBP7.86□□□□□ -1.15
VPS35-205ENST00000563984 SMG9Q9H0W8 520 aaKnown RBP7.86□□□□□ -1.15
VPS35-205ENST00000563984 RBSNQ9H1K0 784 aa7.86□□□□□ -1.15
VPS35-205ENST00000563984 EGFL7Q9UHF1 273 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms