RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 CCDC87Q9NVE4 849 aa6.14□□□□□ -1.43
VPS35-203ENST00000562420 STARD13Q9Y3M8 1113 aa6.14□□□□□ -1.43
VPS35-203ENST00000562420 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.13□□□□□ -1.43
VPS35-203ENST00000562420 NEFLP07196 543 aa6.13□□□□□ -1.43
VPS35-203ENST00000562420 AMPD1P23109 780 aa6.13□□□□□ -1.43
VPS35-203ENST00000562420 TTC39BQ5VTQ0 682 aaPredicted RBP6.13□□□□□ -1.43
VPS35-203ENST00000562420 DMRTB1Q96MA1 342 aa6.13□□□□□ -1.43
VPS35-203ENST00000562420 DCTN4Q9UJW0 460 aa6.13□□□□□ -1.43
VPS35-203ENST00000562420 KRBA1A5PL33 1030 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 ZBTB42B2RXF5 422 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 GNB5O14775 395 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 IGHA2P01877 340 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 LINC00114Q6XXX2 140 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 SND1Q7KZF4 910 aaKnown RBP eCLIP6.12□□□□□ -1.43
VPS35-203ENST00000562420 CACTIN-AS1Q8N1I8 211 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 MICALL1Q8N3F8 863 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 KRTAP9-2Q9BYQ4 174 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 TMEM63CQ9P1W3 806 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 NAGPAQ9UK23 515 aa6.12□□□□□ -1.43
VPS35-203ENST00000562420 LOC102724428A0A0B4J2F2 783 aa6.11□□□□□ -1.43
VPS35-203ENST00000562420 K7ELQ4 463 aaPredicted RBP6.11□□□□□ -1.43
VPS35-203ENST00000562420 TNFRSF21O75509 655 aa6.11□□□□□ -1.43
VPS35-203ENST00000562420 ALBP02768 609 aa6.11□□□□□ -1.43
VPS35-203ENST00000562420 SIK1P57059 783 aa6.11□□□□□ -1.43
VPS35-203ENST00000562420 HYAL2Q12891 473 aa6.11□□□□□ -1.43
VPS35-203ENST00000562420 C8orf34Q49A92 452 aa6.11□□□□□ -1.43
VPS35-203ENST00000562420 FAM35AQ86V20 835 aa6.11□□□□□ -1.43
VPS35-203ENST00000562420 LPIN3Q9BQK8 851 aa6.11□□□□□ -1.43
VPS35-203ENST00000562420 RBSNQ9H1K0 784 aa6.11□□□□□ -1.43
VPS35-203ENST00000562420 NOP53Q9NZM5 478 aaKnown RBP6.11□□□□□ -1.43
VPS35-203ENST00000562420 M0R082 166 aa6.1□□□□□ -1.43
VPS35-203ENST00000562420 LILRB5O75023 590 aa6.1□□□□□ -1.43
VPS35-203ENST00000562420 FURINP09958 794 aa6.1□□□□□ -1.43
VPS35-203ENST00000562420 BAG6P46379 1132 aa6.1□□□□□ -1.43
VPS35-203ENST00000562420 PSAPL1Q6NUJ1 521 aa6.1□□□□□ -1.43
VPS35-203ENST00000562420 AEBP1Q8IUX7 1158 aa6.1□□□□□ -1.43
VPS35-203ENST00000562420 ZNF417Q8TAU3 575 aa6.1□□□□□ -1.43
VPS35-203ENST00000562420 ZNF587Q96SQ5 575 aaPredicted RBP6.1□□□□□ -1.43
VPS35-203ENST00000562420 CHRDQ9H2X0 955 aa6.1□□□□□ -1.43
VPS35-203ENST00000562420 RRAGCQ9HB90 399 aa6.1□□□□□ -1.43
VPS35-203ENST00000562420 BIN2Q9UBW5 565 aaPredicted RBP6.1□□□□□ -1.43
VPS35-203ENST00000562420 SPDYE3A6NKU9 549 aa6.09□□□□□ -1.43
VPS35-203ENST00000562420 GHRHP01286 108 aa6.09□□□□□ -1.43
VPS35-203ENST00000562420 NID1P14543 1247 aa6.09□□□□□ -1.43
VPS35-203ENST00000562420 TBC1D8BQ0IIM8 1120 aa6.09□□□□□ -1.43
VPS35-203ENST00000562420 COL9A3Q14050 684 aaPredicted RBP6.09□□□□□ -1.43
VPS35-203ENST00000562420 PERM1Q5SV97 790 aa6.09□□□□□ -1.43
VPS35-203ENST00000562420 ILDR2Q71H61 639 aa6.09□□□□□ -1.43
VPS35-203ENST00000562420 KRTAP1-3Q8IUG1 177 aa6.09□□□□□ -1.43
VPS35-203ENST00000562420 DNAJC25Q9H1X3 360 aa6.09□□□□□ -1.43
VPS35-203ENST00000562420 SALL4Q9UJQ4 1053 aa6.09□□□□□ -1.43
VPS35-203ENST00000562420 KRTAP9-6A0A140TA67 174 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 A6NHS1 94 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 PHACTR2O75167 634 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 RGS9O75916 674 aaPredicted RBP6.08□□□□□ -1.44
VPS35-203ENST00000562420 EDN3P14138 238 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 CPB1P15086 417 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 EIF2AK2P19525 551 aaKnown RBP6.08□□□□□ -1.44
VPS35-203ENST00000562420 CES1P23141 567 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 COL8A1P27658 744 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 ELMSAN1Q6PJG2 1045 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 CEP120Q8N960 986 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 C1orf127Q8N9H9 656 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 SPACA7Q96KW9 195 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 ASB16Q96NS5 453 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 NSUN5Q96P11 429 aaKnown RBP6.08□□□□□ -1.44
VPS35-203ENST00000562420 IGFLR1Q9H665 355 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 CNTN3Q9P232 1028 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 AMOTL2Q9Y2J4 779 aa6.08□□□□□ -1.44
VPS35-203ENST00000562420 GPR182O15218 404 aa6.07□□□□□ -1.44
VPS35-203ENST00000562420 TREHO43280 583 aa6.07□□□□□ -1.44
VPS35-203ENST00000562420 AFF1P51825 1210 aaKnown RBP6.07□□□□□ -1.44
VPS35-203ENST00000562420 GRIK5Q16478 980 aa6.07□□□□□ -1.44
VPS35-203ENST00000562420 TMC7Q7Z402 723 aa6.07□□□□□ -1.44
VPS35-203ENST00000562420 ZSCAN29Q8IWY8 852 aaPredicted RBP6.07□□□□□ -1.44
VPS35-203ENST00000562420 Q8N3U1 123 aa6.07□□□□□ -1.44
VPS35-203ENST00000562420 DTWD1Q8N5C7 304 aa6.07□□□□□ -1.44
VPS35-203ENST00000562420 PLD4Q96BZ4 506 aa6.07□□□□□ -1.44
VPS35-203ENST00000562420 ZFYVE28Q9HCC9 887 aa6.07□□□□□ -1.44
VPS35-203ENST00000562420 JPH1Q9HDC5 661 aaPredicted RBP6.07□□□□□ -1.44
VPS35-203ENST00000562420 CYP2E1P05181 493 aaPredicted RBP6.06□□□□□ -1.44
VPS35-203ENST00000562420 MAPK1P28482 360 aa6.06□□□□□ -1.44
VPS35-203ENST00000562420 MLLT1Q03111 559 aaPredicted RBP6.06□□□□□ -1.44
VPS35-203ENST00000562420 DSC3Q14574 896 aa6.06□□□□□ -1.44
VPS35-203ENST00000562420 COL19A1Q14993 1142 aa6.06□□□□□ -1.44
VPS35-203ENST00000562420 COL13A1Q5TAT6 717 aaPredicted RBP6.06□□□□□ -1.44
VPS35-203ENST00000562420 TRIM11Q96F44 468 aa6.06□□□□□ -1.44
VPS35-203ENST00000562420 SMG9Q9H0W8 520 aaKnown RBP6.06□□□□□ -1.44
VPS35-203ENST00000562420 SUV39H2Q9H5I1 410 aa6.06□□□□□ -1.44
VPS35-203ENST00000562420 SRA1Q9HD15 236 aaKnown RBP6.06□□□□□ -1.44
VPS35-203ENST00000562420 FOXD3Q9UJU5 478 aaPredicted RBP6.06□□□□□ -1.44
VPS35-203ENST00000562420 EREGO14944 169 aa6.05□□□□□ -1.44
VPS35-203ENST00000562420 CPNE3O75131 537 aaKnown RBP6.05□□□□□ -1.44
VPS35-203ENST00000562420 SMNDC1O75940 238 aaKnown RBP eCLIP6.05□□□□□ -1.44
VPS35-203ENST00000562420 NCAPG2Q86XI2 1143 aa6.05□□□□□ -1.44
VPS35-203ENST00000562420 GALNT12Q8IXK2 581 aa6.05□□□□□ -1.44
VPS35-203ENST00000562420 PBX4Q9BYU1 374 aa6.05□□□□□ -1.44
VPS35-203ENST00000562420 MUC3BQ9H195 1237 aa6.05□□□□□ -1.44
VPS35-203ENST00000562420 J3QW42 95 aa6.04□□□□□ -1.44
VPS35-203ENST00000562420 SPATA31C1P0DKV0 1188 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms